C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003AH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136535-ENSG00000144290 CGP 9606 2:161416094-161985282
GeneTranscriptPositionBiotype
ENSG00000136535 (TBR1)
T-box, brain, 1 		ENST00000389554 (TBR1-001) 161416094-161425870 protein_coding
ENST00000410035 (TBR1-002) 161417895-161424286 protein_coding
ENST00000411412 (TBR1-006) 161417779-161423776 protein_coding
ENST00000463544 (TBR1-005) 161416331-161423885 retained_intron
ENST00000477804 (TBR1-003) 161419210-161423685 processed_transcript
ENST00000489530 (TBR1-004) 161419511-161423455 processed_transcript
ENSG00000144290 (SLC4A10)
solute carrier family 4, sodium bicarbonate transporter, member 10 		ENST00000272716 (SLC4A10-009) 161624426-161983245 protein_coding
ENST00000375514 (SLC4A10-201) 161624335-161985275 protein_coding
ENST00000415876 (SLC4A10-001) 161624338-161985282 protein_coding
ENST00000421911 (SLC4A10-010) 161624461-161983359 protein_coding
ENST00000446228 (SLC4A10-005) 161624461-161983359 nonsense_mediated_decay
ENST00000446997 (SLC4A10-004) 161624426-161985253 protein_coding
ENST00000461456 (SLC4A10-003) 161624418-161873921 processed_transcript
ENST00000481721 (SLC4A10-006) 161624435-161839876 processed_transcript
ENST00000482861 (SLC4A10-007) 161424332-161771035 processed_transcript
ENST00000493021 (SLC4A10-002) 161624400-161901160 processed_transcript
ENST00000605990 (SLC4A10-008) 161424373-161624566 processed_transcript
ENST00000606386 (SLC4A10-011) 161427453-161651290 processed_transcript
ENSG00000224076 (AC009487.4)
 ENST00000437683 (AC009487.4-001) 161422659-161423577 antisense
ENST00000444164 (AC009487.4-002) 161422659-161423135 antisense
ENSG00000226121 (AHCTF1P1)
AT hook containing transcription factor 1 pseudogene 1 		ENST00000420969 (AHCTF1P1-001) 161500885-161507705 processed_pseudogene
ENSG00000226946 (AC062022.1)
 ENST00000451026 (AC062022.1-001) 161568502-161570185 processed_pseudogene
ENSG00000235716 (KRT18P46)
keratin 18 pseudogene 46 		ENST00000435568 (KRT18P46-001) 161580072-161581350 processed_pseudogene
ENSG00000253046 (AC092841.1)
 ENST00000517237 (AC092841.1-201) 161918782-161918866 miRNA
ENSG00000276190 (AC092841.3)
 ENST00000611229 (AC092841.3-201) 161886001-161886098 miRNA
ENSG00000280105 (RP11-334E15.1)
 ENST00000624969 (RP11-334E15.1-001) 161433874-161437458 TEC
CIL_0003AH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035033-ENSMUSG00000026904 CGP 10090 2:61802930-62326730
GeneTranscriptPositionBiotype
ENSMUSG00000026904 (Slc4a10)
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 		ENSMUST00000054484 (Slc4a10-003) 62046585-62326730 protein_coding
ENSMUST00000102735 (Slc4a10-001) 62046462-62326730 protein_coding
ENSMUST00000112480 (Slc4a10-002) 62046645-62326730 protein_coding
ENSMUST00000147917 (Slc4a10-006) 62267043-62268778 processed_transcript
ENSMUST00000149527 (Slc4a10-005) 62147862-62158283 processed_transcript
ENSMUST00000155219 (Slc4a10-004) 62046585-62324823 processed_transcript
ENSMUST00000156534 (Slc4a10-007) 62317390-62325377 processed_transcript
ENSMUSG00000035033 (Tbr1)
T-box brain gene 1 		ENSMUST00000048934 (Tbr1-001) 61804453-61814114 protein_coding
ENSMUST00000102737 (Tbr1-002) 61806262-61812531 protein_coding
ENSMUST00000131538 (Tbr1-003) 61806273-61811801 processed_transcript
ENSMUST00000136867 (Tbr1-004) 61802930-61804558 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AH_0001ENSG00000136535ENST00000389554ENST00000410035ENST00000411412ENST00000463544ENST00000477804ENST00000489530ENSG00000144290ENST00000272716ENST00000375514ENST00000415876ENST00000421911ENST00000446228ENST00000446997ENST00000461456ENST00000481721ENST00000482861ENST00000493021ENST00000605990ENST00000606386ENSG00000224076ENST00000437683ENST00000444164ENSG00000226121ENST00000420969ENSG00000226946ENST00000451026ENSG00000235716ENST00000435568ENSG00000253046ENST00000517237ENSG00000276190ENST00000611229ENSG00000280105ENST00000624969CIL_0003AH_0002ENSMUSG00000026904ENSMUST00000054484ENSMUST00000102735ENSMUST00000112480ENSMUST00000147917ENSMUST00000149527ENSMUST00000155219ENSMUST00000156534ENSMUSG00000035033ENSMUST00000048934ENSMUST00000102737ENSMUST00000131538ENSMUST00000136867
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AH_0001ENSG00000136535ENST00000389554ENST00000411412ENST00000463544ENSG00000144290ENST00000272716ENST00000375514ENST00000415876ENST00000421911ENST00000446228ENST00000446997ENST00000461456ENST00000606386ENSG00000224076ENST00000437683ENSG00000226121ENST00000420969ENSG00000226946ENST00000451026ENSG00000235716ENST00000435568ENSG00000253046ENST00000517237ENSG00000276190ENST00000611229ENSG00000280105ENST00000624969CIL_0003AH_0002ENSMUSG00000026904ENSMUST00000054484ENSMUST00000102735ENSMUST00000112480ENSMUST00000155219ENSMUST00000156534ENSMUSG00000035033ENSMUST00000048934ENSMUST00000102737ENSMUST00000136867
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136535 ENST00000389554 N/A N/A N/A 33.345±0.00 N/A N/A N/A 0.019±0.00 N/A 0.048±0.00 0.010±0.00 N/A N/A N/A
ENST00000410035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.272±0.00 N/A N/A
ENST00000463544 0.010±0.00 N/A N/A N/A 0.034±0.02 N/A 0.002±0.00 N/A N/A 0.003±0.00 N/A N/A 0.006±0.00 N/A
ENST00000477804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144290 ENST00000272716 0.012±0.00 N/A 0.029±0.00 14.834±0.00 0.346±0.00 N/A 0.033±0.00 0.135±0.00 0.040±0.00 N/A N/A 0.013±0.01 0.011±0.00 0.319±0.00
ENST00000375514 N/A N/A N/A 7.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415876 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.033±0.00 N/A N/A 0.002±0.00 0.009±0.01 N/A
ENST00000421911 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A
ENST00000446228 N/A N/A N/A N/A 0.019±0.00 0.344±0.00 N/A N/A N/A N/A N/A N/A N/A 0.243±0.00
ENST00000446997 N/A 0.118±0.00 N/A 11.411±1.05 N/A 0.260±0.00 0.003±0.00 N/A 0.079±0.00 N/A N/A 0.016±0.01 0.022±0.00 N/A
ENST00000461456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A N/A
ENST00000481721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606386 N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000224076 ENST00000437683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.586±0.28
ENST00000444164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226121 ENST00000420969 0.009±0.00 N/A N/A 0.003±0.00 N/A 0.033±0.01 0.026±0.00 0.042±0.00 0.022±0.00 0.039±0.02 0.014±0.00 0.066±0.05 N/A 0.752±0.42
ENSG00000226946 ENST00000451026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00
ENSG00000235716 ENST00000435568 N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.09
ENSG00000253046 ENST00000517237 N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276190 ENST00000611229 1.320±0.00 0.284±0.00 N/A N/A 1.201±0.00 0.264±0.00 0.560±0.00 0.292±0.00 N/A N/A N/A 72.186±0.00 N/A 1.299±0.00
ENSG00000280105 ENST00000624969 0.017±0.00 0.101±0.00 N/A 0.275±0.04 0.103±0.04 0.014±0.00 0.049±0.04 0.109±0.00 0.021±0.00 0.021±0.00 0.014±0.00 0.018±0.00 N/A 0.083±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026904 ENSMUST00000054484 0.014±0.00 0.366±0.12 0.012±0.01 2.557±0.16 0.030±0.02 N/A 0.020±0.01 0.022±0.01 0.008±0.01 0.010±0.00 0.087±0.00 0.026±0.02 0.007±0.00 0.113±0.02
ENSMUST00000102735 N/A N/A N/A 2.693±2.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112480 N/A N/A N/A 2.910±1.67 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A
ENSMUST00000147917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155219 N/A 0.232±0.14 N/A 24.217±0.00 N/A 0.023±0.00 0.012±0.00 0.044±0.04 N/A 0.025±0.00 0.081±0.03 0.086±0.04 N/A 0.162±0.12
ENSMUST00000156534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A
ENSMUSG00000035033 ENSMUST00000048934 0.011±0.00 0.034±0.03 0.015±0.00 12.576±7.78 0.010±0.00 N/A N/A 0.014±0.01 0.020±0.02 0.029±0.00 0.012±0.00 0.026±0.01 0.026±0.02 0.109±0.06
ENSMUST00000102737 0.035±0.00 0.013±0.00 N/A N/A 0.055±0.02 0.027±0.01 N/A N/A N/A 0.023±0.01 N/A 0.083±0.05 N/A 0.370±0.00
ENSMUST00000131538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136867 N/A N/A N/A N/A 0.094±0.00 N/A N/A 0.024±0.00 0.009±0.00 N/A N/A N/A 0.032±0.00 N/A

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