C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily M, member 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144481 TRPM8 9606 + 2:233917398-234019522 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324695 TRPM8-001 233917398-234019522 protein_coding
  ENST00000355722 TRPM8-002 233929716-233942989 protein_coding
  ENST00000409625 TRPM8-003 233929742-233942879 protein_coding
  ENST00000433712 TRPM8-201 233917398-234019522 protein_coding
  ENST00000439148 TRPM8-006 233981808-234018438 nonsense_mediated_decay
  ENST00000444298 TRPM8-013 233917405-234017329 nonsense_mediated_decay
  ENST00000456930 TRPM8-014 233966618-234017843 protein_coding
  ENST00000466594 TRPM8-011 234013225-234014687 processed_transcript
  ENST00000475044 TRPM8-010 233968162-233996516 processed_transcript
  ENST00000477103 TRPM8-015 233980122-233985795 retained_intron
  ENST00000477698 TRPM8-005 233966635-233969912 retained_intron
  ENST00000479332 TRPM8-009 233933740-233937450 processed_transcript
  ENST00000487033 TRPM8-012 233953709-233960924 retained_intron
  ENST00000490797 TRPM8-004 233965982-233970539 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000324695ENST00000355722ENST00000409625ENST00000433712ENST00000439148ENST00000456930ENST00000475044ENST00000477103ENST00000490797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000324695 N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00
ENST00000355722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00
ENST00000409625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.954±0.00
ENST00000433712 0.007±0.00 N/A N/A N/A 0.004±0.00 0.008±0.00 N/A N/A N/A N/A 0.007±0.00 0.005±0.00 0.065±0.00
ENST00000439148 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A 0.006±0.00 N/A 0.232±0.00
ENST00000456930 N/A N/A N/A 0.115±0.00 N/A N/A 0.055±0.00 5.910±0.00 4.068±0.00 N/A N/A N/A N/A
ENST00000475044 N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.131±0.00 N/A N/A 0.041±0.00 N/A N/A
ENST00000477103 N/A N/A 1.212±0.00 0.876±0.00 N/A 0.342±0.00 N/A 10.474±0.00 N/A N/A N/A N/A N/A
ENST00000490797 N/A 0.451±0.00 N/A N/A 0.104±0.00 0.119±0.00 0.070±0.00 N/A N/A 0.065±0.00 0.029±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H4 CIL_0007H4_0001 CGP 2:233833416-234019522
CIL_0003R4 CIL_0003R4_0001 CGP 2:233917398-234077134

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005262 IEA calcium channel activity
GO:0005783 IEA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006812 IEA cation transport
GO:0006816 IEA calcium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0009266 IEA response to temperature stimulus
GO:0009409 IEA response to cold
GO:0009897 IEA external side of plasma membrane
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016048 IEA detection of temperature stimulus
GO:0034220 TAS ion transmembrane transport
GO:0042803 IEA protein homodimerization activity
GO:0050951 IEA sensory perception of temperature stimulus
GO:0050955 IEA thermoception
GO:0051289 IEA protein homotetramerization
GO:0055085 TAS:IEA transmembrane transport
GO:0070207 IEA protein homotrimerization
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000036251 Trpm8 transient receptor potential cation channel, subfamily M, member 8 protein_coding Mus_musculus

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