C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003R4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144481-ENSG00000072080 CGP 9606 2:233917398-234077134
GeneTranscriptPositionBiotype
ENSG00000072080 (SPP2)
secreted phosphoprotein 2, 24kDa 		ENST00000168148 (SPP2-001) 234050699-234077134 protein_coding
ENST00000373368 (SPP2-002) 234050679-234077130 protein_coding
ENST00000425558 (SPP2-004) 234050787-234070010 protein_coding
ENST00000492481 (SPP2-003) 234050837-234056278 processed_transcript
ENSG00000144481 (TRPM8)
transient receptor potential cation channel, subfamily M, member 8 		ENST00000324695 (TRPM8-001) 233917398-234019522 protein_coding
ENST00000355722 (TRPM8-002) 233929716-233942989 protein_coding
ENST00000409625 (TRPM8-003) 233929742-233942879 protein_coding
ENST00000433712 (TRPM8-201) 233917398-234019522 protein_coding
ENST00000439148 (TRPM8-006) 233981808-234018438 nonsense_mediated_decay
ENST00000444298 (TRPM8-013) 233917405-234017329 nonsense_mediated_decay
ENST00000456930 (TRPM8-014) 233966618-234017843 protein_coding
ENST00000466594 (TRPM8-011) 234013225-234014687 processed_transcript
ENST00000475044 (TRPM8-010) 233968162-233996516 processed_transcript
ENST00000477103 (TRPM8-015) 233980122-233985795 retained_intron
ENST00000477698 (TRPM8-005) 233966635-233969912 retained_intron
ENST00000479332 (TRPM8-009) 233933740-233937450 processed_transcript
ENST00000487033 (TRPM8-012) 233953709-233960924 retained_intron
ENST00000490797 (TRPM8-004) 233965982-233970539 retained_intron
ENSG00000274951 (AC005538.1)
 ENST00000615649 (AC005538.1-201) 234012157-234012265 miRNA
CIL_0003R4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036251-ENSMUSG00000026295 CGP 10090 1:88277661-88426438
GeneTranscriptPositionBiotype
ENSMUSG00000026295 (Spp2)
secreted phosphoprotein 2 		ENSMUST00000027518 (Spp2-001) 88406961-88426438 protein_coding
ENSMUST00000176708 (Spp2-002) 88407279-88426438 protein_coding
ENSMUST00000189225 (Spp2-003) 88407406-88426432 nonsense_mediated_decay
ENSMUSG00000036251 (Trpm8)
transient receptor potential cation channel, subfamily M, member 8 		ENSMUST00000040210 (Trpm8-002) 88306759-88389293 protein_coding
ENSMUST00000113114 (Trpm8-001) 88303283-88388851 protein_coding
ENSMUST00000148138 (Trpm8-003) 88277661-88308073 processed_transcript
ENSMUST00000171176 (Trpm8-201) 88318913-88388851 protein_coding
ENSMUSG00000085420 (4930453O03Rik)
RIKEN cDNA 4930453O03 gene 		ENSMUST00000147594 (4930453O03Rik-001) 88347489-88352930 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003R4_0001ENSG00000072080ENST00000168148ENST00000373368ENST00000425558ENST00000492481ENSG00000144481ENST00000324695ENST00000355722ENST00000409625ENST00000433712ENST00000439148ENST00000444298ENST00000456930ENST00000466594ENST00000475044ENST00000477103ENST00000477698ENST00000479332ENST00000487033ENST00000490797ENSG00000274951ENST00000615649CIL_0003R4_0002ENSMUSG00000026295ENSMUST00000027518ENSMUST00000176708ENSMUST00000189225ENSMUSG00000036251ENSMUST00000040210ENSMUST00000113114ENSMUST00000148138ENSMUST00000171176ENSMUSG00000085420ENSMUST00000147594
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003R4_0001ENSG00000072080ENST00000168148ENST00000373368ENST00000492481ENSG00000144481ENST00000324695ENST00000355722ENST00000409625ENST00000433712ENST00000439148ENST00000456930ENST00000475044ENST00000477103ENST00000490797ENSG00000274951ENST00000615649CIL_0003R4_0002ENSMUSG00000026295ENSMUST00000027518ENSMUST00000176708ENSMUSG00000036251ENSMUST00000040210ENSMUST00000171176ENSMUSG00000085420ENSMUST00000147594
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072080 ENST00000168148 N/A N/A N/A N/A N/A N/A N/A 58.139±0.00 21.378±0.00 N/A N/A N/A N/A N/A
ENST00000373368 N/A N/A N/A N/A 0.299±0.00 N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000425558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492481 2.194±0.00 4.908±0.00 2.684±0.00 2.182±1.36 2.667±0.68 0.483±0.33 1.194±0.75 1.646±0.00 1.316±0.00 1.174±1.05 0.391±0.16 1.835±2.27 2.078±1.70 7.971±5.85
ENSG00000144481 ENST00000324695 N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00
ENST00000355722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00
ENST00000409625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.954±0.00
ENST00000433712 0.007±0.00 N/A N/A N/A 0.004±0.00 0.008±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.005±0.00 0.065±0.00
ENST00000439148 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.006±0.00 N/A 0.232±0.00
ENST00000444298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456930 N/A N/A N/A 0.115±0.00 N/A N/A 0.055±0.00 5.910±0.00 4.068±0.00 N/A N/A N/A N/A N/A
ENST00000466594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475044 N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.131±0.00 N/A N/A N/A 0.041±0.00 N/A N/A
ENST00000477103 N/A N/A 1.212±0.00 0.876±0.00 N/A 0.342±0.00 N/A 10.474±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490797 N/A 0.451±0.00 N/A N/A 0.104±0.00 0.119±0.00 0.070±0.00 N/A N/A N/A 0.065±0.00 0.029±0.00 N/A N/A
ENSG00000274951 ENST00000615649 0.948±0.00 3.288±0.00 N/A 1.677±0.00 1.073±0.00 0.478±0.00 0.707±0.00 1.295±0.00 0.713±0.00 N/A N/A N/A N/A 0.693±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026295 ENSMUST00000027518 0.350±0.07 0.078±0.00 0.049±0.00 0.236±0.04 0.385±0.27 N/A N/A 548.373±16.70 181.732±52.70 0.087±0.00 N/A 0.195±0.11 295.613±350.04 N/A
ENSMUST00000176708 N/A N/A 0.014±0.00 0.153±0.00 0.057±0.00 N/A 0.052±0.00 N/A N/A 0.083±0.00 0.092±0.00 0.214±0.00 21.480±28.29 N/A
ENSMUST00000189225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036251 ENSMUST00000040210 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 0.354±0.06
ENSMUST00000113114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171176 0.009±0.00 N/A N/A 0.026±0.02 0.041±0.01 0.016±0.00 0.015±0.00 0.014±0.00 0.014±0.01 N/A N/A 0.007±0.00 0.009±0.00 2.425±0.27
ENSMUSG00000085420 ENSMUST00000147594 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.017±0.00 2.321±0.24

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