C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group D2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144554 FANCD2 9606 + 3:10026414-10101930 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287647 FANCD2-001 10026414-10099660 protein_coding
  ENST00000383807 FANCD2-201 10026429-10101930 protein_coding
  ENST00000419585 FANCD2-002 10026499-10101930 protein_coding
  ENST00000421731 FANCD2-004 10049462-10101926 nonsense_mediated_decay
  ENST00000431693 FANCD2-003 10028620-10041562 protein_coding
  ENST00000435522 FANCD2-005 10026468-10034513 nonsense_mediated_decay
  ENST00000438741 FANCD2-008 10034707-10040684 processed_transcript
  ENST00000464934 FANCD2-007 10046427-10049504 retained_intron
  ENST00000470028 FANCD2-012 10093288-10101282 processed_transcript
  ENST00000470757 FANCD2-011 10064355-10072978 processed_transcript
  ENST00000480909 FANCD2-010 10064693-10072964 retained_intron
  ENST00000483276 FANCD2-006 10045527-10048059 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287647ENST00000383807ENST00000419585ENST00000421731ENST00000431693ENST00000438741ENST00000464934ENST00000470028ENST00000480909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287647 N/A 0.590±0.00 N/A 0.082±0.05 N/A N/A 0.055±0.00 0.144±0.00 N/A N/A N/A 0.091±0.00 N/A N/A
ENST00000383807 0.142±0.00 0.440±0.00 0.054±0.00 0.208±0.00 0.522±0.20 1.796±0.00 N/A N/A 0.260±0.00 0.571±0.00 0.010±0.00 0.593±0.32 0.275±0.07 2.782±0.72
ENST00000419585 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A 0.520±0.28 1.423±0.00 N/A
ENST00000421731 N/A N/A N/A N/A 0.366±0.00 N/A N/A 0.255±0.00 0.051±0.00 N/A N/A 1.194±0.33 N/A N/A
ENST00000431693 0.161±0.00 0.788±0.00 N/A N/A N/A 0.069±0.00 0.072±0.00 N/A 0.067±0.00 0.101±0.00 0.083±0.00 N/A N/A N/A
ENST00000438741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A
ENST00000464934 N/A N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENST00000480909 N/A N/A 1.005±0.00 N/A N/A N/A N/A N/A 0.795±0.00 N/A 0.134±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D5 CIL_0002D5_0001 CGP 3:9962537-10101930
CIL_00059I CIL_00059I_0001 CGP 3:10026414-10108231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000793 IEA condensed chromosome
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005794 IDA Golgi apparatus
GO:0006281 TAS DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007129 IEA synapsis
GO:0007276 IEA gamete generation
GO:0010332 IDA response to gamma radiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070182 IPI DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053574 fancd2 Fanconi anemia, complementation group D2 protein_coding Danio_rerio
ENSMUSG00000034023 Fancd2 Fanconi anemia, complementation group D2 protein_coding Mus_musculus

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