C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002D5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125037-ENSG00000144554 CGP 9606 3:9962537-10101930
GeneTranscriptPositionBiotype
ENSG00000125037 (EMC3)
ER membrane protein complex subunit 3 		ENST00000245046 (EMC3-001) 9962537-9987120 protein_coding
ENST00000429759 (EMC3-005) 9973506-9986682 protein_coding
ENST00000470827 (EMC3-006) 9977029-10011116 protein_coding
ENST00000487465 (EMC3-003) 9968644-9986838 retained_intron
ENST00000497557 (EMC3-004) 9969729-9978297 processed_transcript
ENSG00000144554 (FANCD2)
Fanconi anemia, complementation group D2 		ENST00000287647 (FANCD2-001) 10026414-10099660 protein_coding
ENST00000383807 (FANCD2-201) 10026429-10101930 protein_coding
ENST00000419585 (FANCD2-002) 10026499-10101930 protein_coding
ENST00000421731 (FANCD2-004) 10049462-10101926 nonsense_mediated_decay
ENST00000431693 (FANCD2-003) 10028620-10041562 protein_coding
ENST00000435522 (FANCD2-005) 10026468-10034513 nonsense_mediated_decay
ENST00000438741 (FANCD2-008) 10034707-10040684 processed_transcript
ENST00000464934 (FANCD2-007) 10046427-10049504 retained_intron
ENST00000470028 (FANCD2-012) 10093288-10101282 processed_transcript
ENST00000470757 (FANCD2-011) 10064355-10072978 processed_transcript
ENST00000480909 (FANCD2-010) 10064693-10072964 retained_intron
ENST00000483276 (FANCD2-006) 10045527-10048059 processed_transcript
ENSG00000163705 (FANCD2OS)
FANCD2 opposite strand 		ENST00000431315 (FANCD2OS-003) 10081317-10108084 processed_transcript
ENST00000436517 (FANCD2OS-004) 10081320-10095347 processed_transcript
ENST00000450616 (FANCD2OS-005) 10081320-10085828 processed_transcript
ENST00000450660 (FANCD2OS-002) 10103937-10108223 protein_coding
ENST00000453223 (FANCD2OS-006) 10102903-10104768 protein_coding
ENST00000524279 (FANCD2OS-001) 10081320-10108231 protein_coding
ENSG00000186162 (CIDECP)
cell death-inducing DFFA-like effector c pseudogene 		ENST00000335507 (CIDECP-008) 10015123-10026360 processed_transcript
ENST00000424471 (CIDECP-007) 10017753-10026357 processed_transcript
ENST00000424691 (CIDECP-003) 10017497-10026365 processed_transcript
ENST00000432401 (CIDECP-001) 10014238-10026357 processed_transcript
ENST00000433871 (CIDECP-006) 10017490-10023747 transcribed_unprocessed_pseudogene
ENST00000445082 (CIDECP-005) 10022927-10026326 processed_transcript
ENSG00000229217 (CYCSP11)
cytochrome c, somatic pseudogene 11 		ENST00000436426 (CYCSP11-001) 10057973-10058287 processed_pseudogene
ENSG00000232901 (CYCSP10)
cytochrome c, somatic pseudogene 10 		ENST00000417973 (CYCSP10-001) 10000647-10000940 processed_pseudogene
ENSG00000269982 (RP11-1020A11.2)
 ENST00000602436 (RP11-1020A11.2-001) 9958717-9962539 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002D5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030286-ENSMUSG00000034023 CGP 10090 6:113514874-113597017
GeneTranscriptPositionBiotype
ENSMUSG00000030286 (Emc3)
ER membrane protein complex subunit 3 		ENSMUST00000032425 (Emc3-001) 113514874-113531638 protein_coding
ENSMUST00000154605 (Emc3-002) 113519792-113520909 retained_intron
ENSMUSG00000033963 (Fancd2os)
Fancd2 opposite strand 		ENSMUST00000035870 (Fancd2os-001) 113596762-113600715 protein_coding
ENSMUST00000125139 (Fancd2os-002) 113596761-113600715 nonsense_mediated_decay
ENSMUSG00000034023 (Fancd2)
Fanconi anemia, complementation group D2 		ENSMUST00000036340 (Fancd2-001) 113531682-113597017 protein_coding
ENSMUST00000101051 (Fancd2-002) 113531704-113538719 protein_coding
ENSMUST00000123738 (Fancd2-005) 113551828-113562452 protein_coding
ENSMUST00000124262 (Fancd2-007) 113583418-113586024 retained_intron
ENSMUST00000129462 (Fancd2-006) 113568672-113574598 processed_transcript
ENSMUST00000142453 (Fancd2-004) 113551824-113553990 processed_transcript
ENSMUST00000143535 (Fancd2-003) 113531704-113537836 processed_transcript
ENSMUSG00000092760 (Gm23365)
predicted gene, 23365 		ENSMUST00000175019 (Gm23365-201) 113528550-113528674 miRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002D5_0001ENSG00000125037ENST00000245046ENST00000470827ENST00000487465ENST00000497557ENSG00000144554ENST00000287647ENST00000383807ENST00000419585ENST00000421731ENST00000431693ENST00000438741ENST00000464934ENST00000470028ENST00000480909ENSG00000163705ENST00000431315ENST00000450616ENST00000450660ENST00000524279ENSG00000186162ENST00000335507ENST00000424471ENST00000424691ENST00000432401ENST00000433871ENST00000445082ENSG00000229217ENST00000436426ENSG00000232901ENST00000417973ENSG00000269982ENST00000602436CIL_0002D5_0002ENSMUSG00000030286ENSMUST00000032425ENSMUSG00000033963ENSMUST00000035870ENSMUST00000125139ENSMUSG00000034023ENSMUST00000036340ENSMUST00000123738ENSMUST00000124262ENSMUST00000129462ENSMUST00000143535ENSMUSG00000092760ENSMUST00000175019
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125037 ENST00000245046 N/A N/A N/A 2.161±0.00 4.309±0.00 2.196±0.00 3.948±3.37 N/A 3.131±0.00 2.444±0.00 N/A 4.113±1.88 5.154±0.50 16.348±0.00
ENST00000429759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470827 76.206±0.00 46.349±0.00 N/A 39.392±0.00 84.142±0.00 46.470±0.00 N/A 47.569±0.00 N/A 38.088±0.00 14.551±0.00 25.577±19.78 14.861±0.00 75.613±0.00
ENST00000487465 N/A N/A N/A N/A 2.029±0.00 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497557 33.430±0.00 19.476±0.00 N/A 11.765±0.00 31.675±0.00 12.860±6.41 12.329±7.38 23.294±0.00 N/A 15.016±4.83 51.103±0.00 4.713±0.00 N/A 32.884±0.00
ENSG00000144554 ENST00000287647 N/A 0.590±0.00 N/A 0.082±0.05 N/A N/A 0.055±0.00 0.144±0.00 N/A N/A N/A 0.091±0.00 N/A N/A
ENST00000383807 0.142±0.00 0.440±0.00 0.054±0.00 0.208±0.00 0.522±0.20 1.796±0.00 N/A N/A 0.260±0.00 0.571±0.00 0.010±0.00 0.593±0.32 0.275±0.07 2.782±0.72
ENST00000419585 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A 0.520±0.28 1.423±0.00 N/A
ENST00000421731 N/A N/A N/A N/A 0.366±0.00 N/A N/A 0.255±0.00 0.051±0.00 N/A N/A 1.194±0.33 N/A N/A
ENST00000431693 0.161±0.00 0.788±0.00 N/A N/A N/A 0.069±0.00 0.072±0.00 N/A 0.067±0.00 0.101±0.00 0.083±0.00 N/A N/A N/A
ENST00000435522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A
ENST00000464934 N/A N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENST00000470757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480909 N/A N/A 1.005±0.00 N/A N/A N/A N/A N/A 0.795±0.00 N/A 0.134±0.00 N/A N/A N/A
ENST00000483276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163705 ENST00000431315 N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000436517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450616 N/A N/A N/A N/A N/A N/A N/A N/A 0.367±0.00 0.690±0.00 N/A N/A N/A N/A
ENST00000450660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.001±0.00
ENST00000453223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.563±8.85
ENSG00000186162 ENST00000335507 N/A N/A N/A N/A N/A 0.480±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424471 N/A N/A 0.549±0.00 1.559±0.00 N/A N/A 0.145±0.00 N/A 0.102±0.00 1.341±0.27 N/A 1.213±0.00 0.976±0.00 N/A
ENST00000424691 4.024±0.00 3.392±0.00 N/A 3.587±2.97 2.673±0.00 4.545±0.00 1.679±0.00 4.624±0.00 2.646±0.00 2.778±0.00 1.984±0.00 4.162±0.71 3.740±1.27 3.754±1.31
ENST00000432401 0.569±0.00 0.834±0.00 N/A 0.479±0.00 0.454±0.37 0.626±0.00 0.184±0.00 0.945±0.00 0.228±0.00 N/A 0.180±0.00 0.268±0.10 0.796±0.00 0.780±0.33
ENST00000433871 2.577±0.00 N/A N/A 0.841±0.00 2.074±0.00 0.344±0.00 N/A N/A N/A 0.868±0.00 1.119±0.00 3.770±0.05 2.963±1.02 3.509±0.00
ENST00000445082 N/A 0.760±0.00 N/A N/A 0.930±0.78 0.185±0.00 0.164±0.02 N/A N/A N/A N/A 0.666±0.06 N/A 0.789±0.00
ENSG00000229217 ENST00000436426 N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232901 ENST00000417973 0.874±0.00 0.805±0.00 N/A 0.132±0.00 0.319±0.00 1.997±1.42 0.233±0.00 N/A N/A N/A 1.343±0.00 0.333±0.10 N/A 2.942±0.93
ENSG00000269982 ENST00000602436 N/A N/A 1.287±0.00 1.809±0.00 1.962±0.00 1.113±0.00 0.615±0.00 N/A 1.656±0.00 N/A N/A 1.502±0.16 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030286 ENSMUST00000032425 43.447±4.92 50.885±2.90 36.606±2.62 14.985±2.70 31.090±7.48 26.760±2.36 21.302±0.75 34.662±2.27 21.685±2.47 30.171±6.25 24.485±1.12 30.115±4.47 34.013±10.00 16.205±4.73
ENSMUST00000154605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033963 ENSMUST00000035870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.831±0.00
ENSMUST00000125139 N/A N/A N/A N/A N/A N/A N/A 0.445±0.19 N/A N/A 0.064±0.00 N/A N/A 12.165±0.50
ENSMUSG00000034023 ENSMUST00000036340 0.491±0.37 0.181±0.06 1.679±0.31 1.464±0.80 0.318±0.16 0.356±0.11 0.047±0.01 0.120±0.01 2.607±2.56 0.377±0.18 0.061±0.01 0.740±0.23 1.907±1.22 4.223±1.09
ENSMUST00000101051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123738 N/A N/A N/A N/A N/A N/A 0.133±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124262 N/A 0.572±0.09 N/A N/A N/A 0.298±0.00 0.049±0.02 0.147±0.00 0.084±0.03 0.272±0.06 0.133±0.03 N/A N/A N/A
ENSMUST00000129462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A N/A N/A
ENSMUST00000142453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143535 N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092760 ENSMUST00000175019 N/A N/A N/A 14.616±0.00 N/A N/A N/A N/A 13.716±6.51 N/A 4.495±0.00 35.003±0.00 11.854±4.65 N/A

Loading