C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002D5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125037-ENSG00000144554 CGP 9606 3:9962537-10101930
GeneTranscriptPositionBiotype
ENSG00000125037 (EMC3)
ER membrane protein complex subunit 3 		ENST00000245046 (EMC3-001) 9962537-9987120 protein_coding
ENST00000429759 (EMC3-005) 9973506-9986682 protein_coding
ENST00000470827 (EMC3-006) 9977029-10011116 protein_coding
ENST00000487465 (EMC3-003) 9968644-9986838 retained_intron
ENST00000497557 (EMC3-004) 9969729-9978297 processed_transcript
ENSG00000144554 (FANCD2)
Fanconi anemia, complementation group D2 		ENST00000287647 (FANCD2-001) 10026414-10099660 protein_coding
ENST00000383807 (FANCD2-201) 10026429-10101930 protein_coding
ENST00000419585 (FANCD2-002) 10026499-10101930 protein_coding
ENST00000421731 (FANCD2-004) 10049462-10101926 nonsense_mediated_decay
ENST00000431693 (FANCD2-003) 10028620-10041562 protein_coding
ENST00000435522 (FANCD2-005) 10026468-10034513 nonsense_mediated_decay
ENST00000438741 (FANCD2-008) 10034707-10040684 processed_transcript
ENST00000464934 (FANCD2-007) 10046427-10049504 retained_intron
ENST00000470028 (FANCD2-012) 10093288-10101282 processed_transcript
ENST00000470757 (FANCD2-011) 10064355-10072978 processed_transcript
ENST00000480909 (FANCD2-010) 10064693-10072964 retained_intron
ENST00000483276 (FANCD2-006) 10045527-10048059 processed_transcript
ENSG00000163705 (FANCD2OS)
FANCD2 opposite strand 		ENST00000431315 (FANCD2OS-003) 10081317-10108084 processed_transcript
ENST00000436517 (FANCD2OS-004) 10081320-10095347 processed_transcript
ENST00000450616 (FANCD2OS-005) 10081320-10085828 processed_transcript
ENST00000450660 (FANCD2OS-002) 10103937-10108223 protein_coding
ENST00000453223 (FANCD2OS-006) 10102903-10104768 protein_coding
ENST00000524279 (FANCD2OS-001) 10081320-10108231 protein_coding
ENSG00000186162 (CIDECP)
cell death-inducing DFFA-like effector c pseudogene 		ENST00000335507 (CIDECP-008) 10015123-10026360 processed_transcript
ENST00000424471 (CIDECP-007) 10017753-10026357 processed_transcript
ENST00000424691 (CIDECP-003) 10017497-10026365 processed_transcript
ENST00000432401 (CIDECP-001) 10014238-10026357 processed_transcript
ENST00000433871 (CIDECP-006) 10017490-10023747 transcribed_unprocessed_pseudogene
ENST00000445082 (CIDECP-005) 10022927-10026326 processed_transcript
ENSG00000229217 (CYCSP11)
cytochrome c, somatic pseudogene 11 		ENST00000436426 (CYCSP11-001) 10057973-10058287 processed_pseudogene
ENSG00000232901 (CYCSP10)
cytochrome c, somatic pseudogene 10 		ENST00000417973 (CYCSP10-001) 10000647-10000940 processed_pseudogene
ENSG00000269982 (RP11-1020A11.2)
 ENST00000602436 (RP11-1020A11.2-001) 9958717-9962539 antisense
CIL_0002D5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030286-ENSMUSG00000034023 CGP 10090 6:113514874-113597017
GeneTranscriptPositionBiotype
ENSMUSG00000030286 (Emc3)
ER membrane protein complex subunit 3 		ENSMUST00000032425 (Emc3-001) 113514874-113531638 protein_coding
ENSMUST00000154605 (Emc3-002) 113519792-113520909 retained_intron
ENSMUSG00000033963 (Fancd2os)
Fancd2 opposite strand 		ENSMUST00000035870 (Fancd2os-001) 113596762-113600715 protein_coding
ENSMUST00000125139 (Fancd2os-002) 113596761-113600715 nonsense_mediated_decay
ENSMUSG00000034023 (Fancd2)
Fanconi anemia, complementation group D2 		ENSMUST00000036340 (Fancd2-001) 113531682-113597017 protein_coding
ENSMUST00000101051 (Fancd2-002) 113531704-113538719 protein_coding
ENSMUST00000123738 (Fancd2-005) 113551828-113562452 protein_coding
ENSMUST00000124262 (Fancd2-007) 113583418-113586024 retained_intron
ENSMUST00000129462 (Fancd2-006) 113568672-113574598 processed_transcript
ENSMUST00000142453 (Fancd2-004) 113551824-113553990 processed_transcript
ENSMUST00000143535 (Fancd2-003) 113531704-113537836 processed_transcript
ENSMUSG00000092760 (Gm23365)
predicted gene, 23365 		ENSMUST00000175019 (Gm23365-201) 113528550-113528674 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002D5_0001ENSG00000125037ENST00000245046ENST00000470827ENST00000487465ENST00000497557ENSG00000144554ENST00000287647ENST00000383807ENST00000419585ENST00000421731ENST00000431693ENST00000438741ENST00000464934ENST00000470028ENST00000480909ENSG00000163705ENST00000431315ENST00000450616ENST00000450660ENST00000524279ENSG00000186162ENST00000335507ENST00000424471ENST00000424691ENST00000432401ENST00000433871ENST00000445082ENSG00000229217ENST00000436426ENSG00000232901ENST00000417973ENSG00000269982ENST00000602436CIL_0002D5_0002ENSMUSG00000030286ENSMUST00000032425ENSMUSG00000033963ENSMUST00000035870ENSMUST00000125139ENSMUSG00000034023ENSMUST00000036340ENSMUST00000123738ENSMUST00000124262ENSMUST00000129462ENSMUST00000143535ENSMUSG00000092760ENSMUST00000175019
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125037 ENST00000245046 N/A N/A N/A 2.161±0.00 4.309±0.00 2.196±0.00 3.948±3.37 N/A 3.131±0.00 2.444±0.00 N/A 4.113±1.88 5.154±0.50 16.348±0.00
ENST00000429759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470827 76.206±0.00 46.349±0.00 N/A 39.392±0.00 84.142±0.00 46.470±0.00 N/A 47.569±0.00 N/A 38.088±0.00 14.551±0.00 25.577±19.78 14.861±0.00 75.613±0.00
ENST00000487465 N/A N/A N/A N/A 2.029±0.00 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497557 33.430±0.00 19.476±0.00 N/A 11.765±0.00 31.675±0.00 12.860±6.41 12.329±7.38 23.294±0.00 N/A 15.016±4.83 51.103±0.00 4.713±0.00 N/A 32.884±0.00
ENSG00000144554 ENST00000287647 N/A 0.590±0.00 N/A 0.082±0.05 N/A N/A 0.055±0.00 0.144±0.00 N/A N/A N/A 0.091±0.00 N/A N/A
ENST00000383807 0.142±0.00 0.440±0.00 0.054±0.00 0.208±0.00 0.522±0.20 1.796±0.00 N/A N/A 0.260±0.00 0.571±0.00 0.010±0.00 0.593±0.32 0.275±0.07 2.782±0.72
ENST00000419585 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A 0.520±0.28 1.423±0.00 N/A
ENST00000421731 N/A N/A N/A N/A 0.366±0.00 N/A N/A 0.255±0.00 0.051±0.00 N/A N/A 1.194±0.33 N/A N/A
ENST00000431693 0.161±0.00 0.788±0.00 N/A N/A N/A 0.069±0.00 0.072±0.00 N/A 0.067±0.00 0.101±0.00 0.083±0.00 N/A N/A N/A
ENST00000435522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A
ENST00000464934 N/A N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENST00000470757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480909 N/A N/A 1.005±0.00 N/A N/A N/A N/A N/A 0.795±0.00 N/A 0.134±0.00 N/A N/A N/A
ENST00000483276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163705 ENST00000431315 N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000436517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450616 N/A N/A N/A N/A N/A N/A N/A N/A 0.367±0.00 0.690±0.00 N/A N/A N/A N/A
ENST00000450660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.001±0.00
ENST00000453223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.563±8.85
ENSG00000186162 ENST00000335507 N/A N/A N/A N/A N/A 0.480±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424471 N/A N/A 0.549±0.00 1.559±0.00 N/A N/A 0.145±0.00 N/A 0.102±0.00 1.341±0.27 N/A 1.213±0.00 0.976±0.00 N/A
ENST00000424691 4.024±0.00 3.392±0.00 N/A 3.587±2.97 2.673±0.00 4.545±0.00 1.679±0.00 4.624±0.00 2.646±0.00 2.778±0.00 1.984±0.00 4.162±0.71 3.740±1.27 3.754±1.31
ENST00000432401 0.569±0.00 0.834±0.00 N/A 0.479±0.00 0.454±0.37 0.626±0.00 0.184±0.00 0.945±0.00 0.228±0.00 N/A 0.180±0.00 0.268±0.10 0.796±0.00 0.780±0.33
ENST00000433871 2.577±0.00 N/A N/A 0.841±0.00 2.074±0.00 0.344±0.00 N/A N/A N/A 0.868±0.00 1.119±0.00 3.770±0.05 2.963±1.02 3.509±0.00
ENST00000445082 N/A 0.760±0.00 N/A N/A 0.930±0.78 0.185±0.00 0.164±0.02 N/A N/A N/A N/A 0.666±0.06 N/A 0.789±0.00
ENSG00000229217 ENST00000436426 N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232901 ENST00000417973 0.874±0.00 0.805±0.00 N/A 0.132±0.00 0.319±0.00 1.997±1.42 0.233±0.00 N/A N/A N/A 1.343±0.00 0.333±0.10 N/A 2.942±0.93
ENSG00000269982 ENST00000602436 N/A N/A 1.287±0.00 1.809±0.00 1.962±0.00 1.113±0.00 0.615±0.00 N/A 1.656±0.00 N/A N/A 1.502±0.16 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030286 ENSMUST00000032425 43.447±4.92 50.885±2.90 36.606±2.62 14.985±2.70 31.090±7.48 26.760±2.36 21.302±0.75 34.662±2.27 21.685±2.47 30.171±6.25 24.485±1.12 30.115±4.47 34.013±10.00 16.205±4.73
ENSMUST00000154605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033963 ENSMUST00000035870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.831±0.00
ENSMUST00000125139 N/A N/A N/A N/A N/A N/A N/A 0.445±0.19 N/A N/A 0.064±0.00 N/A N/A 12.165±0.50
ENSMUSG00000034023 ENSMUST00000036340 0.491±0.37 0.181±0.06 1.679±0.31 1.464±0.80 0.318±0.16 0.356±0.11 0.047±0.01 0.120±0.01 2.607±2.56 0.377±0.18 0.061±0.01 0.740±0.23 1.907±1.22 4.223±1.09
ENSMUST00000101051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123738 N/A N/A N/A N/A N/A N/A 0.133±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124262 N/A 0.572±0.09 N/A N/A N/A 0.298±0.00 0.049±0.02 0.147±0.00 0.084±0.03 0.272±0.06 0.133±0.03 N/A N/A N/A
ENSMUST00000129462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A N/A N/A
ENSMUST00000142453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143535 N/A 0.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092760 ENSMUST00000175019 N/A N/A N/A 14.616±0.00 N/A N/A N/A N/A 13.716±6.51 N/A 4.495±0.00 35.003±0.00 11.854±4.65 N/A

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