C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RCD1 required for cell differentiation1 homolog (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144580 RQCD1 9606 + 2:218568580-218597080 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273064 RQCD1-001 218568580-218597080 protein_coding
  ENST00000295701 RQCD1-002 218568875-218593845 protein_coding
  ENST00000418808 RQCD1-007 218592316-218594896 protein_coding
  ENST00000432877 RQCD1-004 218568859-218584656 nonsense_mediated_decay
  ENST00000433439 RQCD1-003 218568815-218580724 nonsense_mediated_decay
  ENST00000473626 RQCD1-006 218592304-218593072 retained_intron
  ENST00000489687 RQCD1-005 218568931-218574159 processed_transcript
  ENST00000542068 RQCD1-201 218568708-218596424 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273064ENST00000295701ENST00000542068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273064 N/A N/A 0.369±0.00 N/A 0.540±0.00 0.692±0.00 N/A N/A N/A 0.679±0.00 1.462±0.00 3.307±0.00 1.716±0.00 N/A
ENST00000295701 N/A N/A 2.126±0.00 2.568±0.00 3.946±0.00 2.960±0.00 1.517±0.75 1.378±0.00 4.520±0.00 4.559±0.00 N/A 6.584±0.00 N/A N/A
ENST00000542068 7.568±0.00 9.256±0.00 1.387±0.00 2.862±0.77 2.742±0.99 2.928±0.03 1.698±1.41 3.944±2.27 2.530±0.21 4.025±1.73 3.214±0.00 7.296±0.78 3.704±0.29 9.326±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064Y CIL_00064Y_0001 CGP 2:218450251-218597080
CIL_00066C CIL_00066C_0001 CGP 2:218568580-218637184

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0007548 TAS sex differentiation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019221 IEA cytokine-mediated signaling pathway
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0033147 IMP negative regulation of intracellular estrogen receptor signaling pathway
GO:2000327 IDA positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033855 rqcd1 RCD1 required for cell differentiation1 homolog (S. pombe) protein_coding Danio_rerio
ENSMUSG00000026174 Rqcd1 rcd1 (required for cell differentiation) homolog 1 (S. pombe) protein_coding Mus_musculus

Loading