C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RCD1 required for cell differentiation1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542068 RQCD1-201 ENSG00000144580 9606 + 2:218568708-218596424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000542068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000542068 7.568±0.00 9.256±0.00 1.387±0.00 2.862±0.77 2.742±0.99 2.928±0.03 1.698±1.41 3.944±2.27 2.530±0.21 4.025±1.73 3.214±0.00 7.296±0.78 3.704±0.29 9.326±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064Y CIL_00064Y_0001 CGP 2:218450251-218597080
CIL_00066C CIL_00066C_0001 CGP 2:218568580-218637184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0007548 TAS sex differentiation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0033147 IMP negative regulation of intracellular estrogen receptor signaling pathway
GO:2000327 IDA positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087215 Rqcd1-001 protein_coding Mus_musculus 0 1984
ENSMUST00000137100 Rqcd1-002 processed_transcript Mus_musculus 0 693

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