C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RCD1 required for cell differentiation1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273064 RQCD1-001 ENSG00000144580 9606 + 2:218568580-218597080 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLungMuscleOvaryPlacentaENST00000273064
Transcript ID Bladder Breast Colon Lung Muscle Ovary Placenta
ENST00000273064 0.369±0.00 0.540±0.00 0.692±0.00 0.679±0.00 1.462±0.00 3.307±0.00 1.716±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064Y CIL_00064Y_0001 CGP 2:218450251-218597080
CIL_00066C CIL_00066C_0001 CGP 2:218568580-218637184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0007548 TAS sex differentiation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019221 IEA cytokine-mediated signaling pathway
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0033147 IMP negative regulation of intracellular estrogen receptor signaling pathway
GO:2000327 IDA positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087215 Rqcd1-001 protein_coding Mus_musculus 0 1984
ENSMUST00000137100 Rqcd1-002 processed_transcript Mus_musculus 0 693

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