C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA element modulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398559 TMF1-001 ENSG00000144747 9606 - 3:69019827-69052303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398559 4.041±0.00 4.851±0.00 1.188±0.00 2.149±0.11 2.842±0.70 2.711±0.31 1.745±0.84 5.470±0.00 2.164±0.51 3.703±0.77 3.813±0.00 2.584±0.63 2.495±0.53 4.238±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TE CIL_0001TE_0002 CGP 3:68975214-69052303
CIL_0001TD CIL_0001TD_0002 CGP 3:69019827-69080408

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001675 IEA acrosome assembly
GO:0001819 IEA positive regulation of cytokine production
GO:0003677 IEA DNA binding
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007286 IEA spermatid development
GO:0007289 IEA spermatid nucleus differentiation
GO:0008584 IEA male gonad development
GO:0010629 IEA negative regulation of gene expression
GO:0016020 IEA membrane
GO:0030317 IEA sperm motility
GO:0032275 IEA luteinizing hormone secretion
GO:0033327 IEA Leydig cell differentiation
GO:0042742 IEA defense response to bacterium
GO:0043066 IEA negative regulation of apoptotic process
GO:0061136 ISS regulation of proteasomal protein catabolic process
GO:0071407 IEA cellular response to organic cyclic compound
GO:2000845 IEA positive regulation of testosterone secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095664 Tmf1-001 protein_coding Mus_musculus 0 3546
ENSMUST00000124173 Tmf1-002 nonsense_mediated_decay Mus_musculus 0 2254

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