C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Vpr (HIV-1) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423656 VPRBP-001 ENSG00000145041 9606 - 3:51395867-51499994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423656
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423656 3.487±0.00 3.286±0.00 2.726±1.00 2.323±1.13 1.931±0.00 4.446±0.00 1.388±0.04 1.862±0.95 2.607±0.00 3.049±1.69 1.725±0.02 16.486±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MV CIL_0005MV_0002 CGP 3:51385047-51397908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008180 IDA COP9 signalosome
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0030183 ISS B cell differentiation
GO:0033151 ISS V(D)J recombination
GO:0035212 IMP cell competition in a multicellular organism
GO:1990244 IDA histone kinase activity (H2A-T120 specific)
GO:1990245 IDA histone H2A-T120 phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055009 Vprbp-003 protein_coding Mus_musculus 0 6408
ENSMUST00000161758 Vprbp-002 protein_coding Mus_musculus 0 6331
ENSMUST00000159645 Vprbp-001 protein_coding Mus_musculus 0 6008
ENSMUST00000188343 Vprbp-007 retained_intron Mus_musculus 0 237
ENSMUST00000163657 Vprbp-004 protein_coding Mus_musculus 0 200
ENSMUST00000159620 Manf-007 protein_coding Mus_musculus 6.00036e-42 178

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