C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Vpr (HIV-1) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335891 VPRBP-201 ENSG00000145041 9606 - 3:51397842-51483838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000335891
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000335891 2.413±0.00 2.875±0.00 3.127±0.00 3.859±0.00 0.993±0.00 2.054±0.00 3.053±0.00 3.691±0.00 3.303±0.93 2.437±1.21 18.998±7.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MV CIL_0005MV_0002 CGP 3:51385047-51397908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008180 IDA COP9 signalosome
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0030183 ISS B cell differentiation
GO:0033151 ISS V(D)J recombination
GO:0035212 IMP cell competition in a multicellular organism
GO:1990244 IDA histone kinase activity (H2A-T120 specific)
GO:1990245 IDA histone H2A-T120 phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055009 Vprbp-003 protein_coding Mus_musculus 0 3675
ENSMUST00000161758 Vprbp-002 protein_coding Mus_musculus 0 3598
ENSMUST00000159645 Vprbp-001 protein_coding Mus_musculus 0 3112
ENSMUST00000163657 Vprbp-004 protein_coding Mus_musculus 0 257
ENSMUST00000055843 Rbm15b-001 protein_coding Mus_musculus 3e-24 119
ENSMUST00000159620 Manf-007 protein_coding Mus_musculus 0.0000000007 71

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