C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145425 RPS3A 9606 + 4:151099573-151104652 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000274065 RPS3A-001 151099573-151104652 protein_coding
  ENST00000503002 RPS3A-008 151099631-151101114 protein_coding
  ENST00000505243 RPS3A-005 151099628-151102932 protein_coding
  ENST00000506126 RPS3A-007 151099674-151104623 protein_coding
  ENST00000507327 RPS3A-011 151099669-151104490 protein_coding
  ENST00000507485 RPS3A-002 151099628-151104205 retained_intron
  ENST00000508783 RPS3A-009 151099640-151103004 protein_coding
  ENST00000509736 RPS3A-006 151099624-151104637 protein_coding
  ENST00000510993 RPS3A-010 151099873-151104528 protein_coding
  ENST00000512690 RPS3A-015 151099639-151104637 protein_coding
  ENST00000512797 RPS3A-014 151099668-151104537 protein_coding
  ENST00000514682 RPS3A-004 151099629-151104637 protein_coding
  ENST00000515792 RPS3A-012 151099671-151104637 protein_coding
  ENST00000515818 RPS3A-013 151099629-151104238 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274065ENST00000509736ENST00000510993ENST00000512690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274065 147.138±0.00 307.123±0.00 53.479±0.00 115.893±57.94 260.354±102.97 336.415±17.21 89.638±6.68 189.662±12.39 189.319±102.57 275.238±23.13 119.076±50.17 548.431±598.32 543.895±346.63 178.578±0.00
ENST00000509736 110.197±0.00 239.433±0.00 N/A 53.884±0.00 147.382±0.00 243.680±0.00 N/A N/A N/A 242.707±0.00 N/A 227.344±21.72 160.098±0.00 136.226±52.92
ENST00000510993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.662±0.00
ENST00000512690 N/A N/A 30.990±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LR CIL_0006LR_0002 CGP 4:150581922-151104652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002181 IBA cytoplasmic translation
GO:0003723 NAS RNA binding
GO:0003735 IEA:IBA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 ISS nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IEA:IDA cytosolic small ribosomal subunit
GO:0030154 IEA cell differentiation
GO:0030529 IDA ribonucleoprotein complex
GO:0043066 IMP negative regulation of apoptotic process
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035692 rps3a ribosomal protein S3A protein_coding Danio_rerio
ENSMUSG00000028081 Rps3a1 ribosomal protein S3A1 protein_coding Mus_musculus

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