C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509736 RPS3A-006 ENSG00000145425 9606 + 4:151099624-151104637 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungOvaryPlacentaTestisENST00000509736
Transcript ID Adipose Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENST00000509736 110.197±0.00 239.433±0.00 53.884±0.00 147.382±0.00 243.680±0.00 242.707±0.00 227.344±21.72 160.098±0.00 136.226±52.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LR CIL_0006LR_0002 CGP 4:150581922-151104652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029722 Rps3a1-001 protein_coding Mus_musculus 0 592
ENSMUST00000074680 Rps3a3-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000074245 Rps3a2-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000119822 Gm13408-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000121639 Gm13508-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000186012 RP24-117M7.2-001 processed_pseudogene Mus_musculus 0 405

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