C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274065 RPS3A-001 ENSG00000145425 9606 + 4:151099573-151104652 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274065 147.138±0.00 307.123±0.00 53.479±0.00 115.893±57.94 260.354±102.97 336.415±17.21 89.638±6.68 189.662±12.39 189.319±102.57 275.238±23.13 119.076±50.17 548.431±598.32 543.895±346.63 178.578±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LR CIL_0006LR_0002 CGP 4:150581922-151104652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002181 IBA cytoplasmic translation
GO:0003723 NAS RNA binding
GO:0003735 IEA:IBA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 ISS nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IEA:IDA cytosolic small ribosomal subunit
GO:0030154 IEA cell differentiation
GO:0030529 IDA ribonucleoprotein complex
GO:0043066 IMP negative regulation of apoptotic process
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029722 Rps3a1-001 protein_coding Mus_musculus 0 1109
ENSMUST00000074680 Rps3a3-001 processed_pseudogene Mus_musculus 0 998
ENSMUST00000074245 Rps3a2-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000119822 Gm13408-001 processed_pseudogene Mus_musculus 0 955
ENSMUST00000121639 Gm13508-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000186012 RP24-117M7.2-001 processed_pseudogene Mus_musculus 0 405

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