C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 18, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145526 CDH18 9606 - 5:19472951-20575873 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000274170 CDH18-201 19473048-19839244 protein_coding
  ENST00000382275 CDH18-001 19473032-19988230 protein_coding
  ENST00000502796 CDH18-003 19473579-19988185 protein_coding
  ENST00000503132 CDH18-009 19839139-19988199 processed_transcript
  ENST00000506372 CDH18-004 19473573-19886272 protein_coding
  ENST00000507632 CDH18-007 19839050-20575863 processed_transcript
  ENST00000507958 CDH18-005 19473048-20575873 protein_coding
  ENST00000508350 CDH18-010 19721391-19804028 processed_transcript
  ENST00000510297 CDH18-011 19472951-19478636 processed_transcript
  ENST00000511273 CDH18-002 19502682-19988207 protein_coding
  ENST00000511423 CDH18-008 19838972-19988198 processed_transcript
  ENST00000515257 CDH18-006 19473615-19838824 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000274170ENST00000382275ENST00000502796ENST00000507958ENST00000508350ENST00000510297ENST00000511273ENST00000515257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000274170 N/A N/A N/A 3.346±1.53 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.307±0.00
ENST00000382275 N/A N/A N/A 3.054±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A
ENST00000507958 0.025±0.00 0.034±0.00 N/A N/A 0.026±0.00 0.006±0.00 0.013±0.00 0.019±0.00 0.006±0.00 0.010±0.00 N/A 0.009±0.00 0.050±0.00 N/A
ENST00000508350 0.233±0.00 0.188±0.00 0.702±0.00 N/A 0.135±0.00 0.029±0.00 0.120±0.00 0.135±0.00 0.046±0.00 N/A 1.570±0.00 0.190±0.06 0.082±0.00 N/A
ENST00000510297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 2.189±0.83
ENST00000511273 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000515257 N/A N/A 0.049±0.00 N/A 0.192±0.00 N/A N/A 0.026±0.00 0.152±0.00 N/A N/A 0.115±0.07 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061371 cdh18 cadherin 18, type 2 protein_coding Danio_rerio
ENSDARG00000067692 CDH18 (2 of 2) cadherin 18, type 2 protein_coding Danio_rerio
ENSMUSG00000040420 Cdh18 cadherin 18 protein_coding Mus_musculus

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