C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 18, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515257 CDH18-006 ENSG00000145526 9606 - 5:19473615-19838824 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverOvaryENST00000515257
Transcript ID Bladder Breast Kidney Liver Ovary
ENST00000515257 0.049±0.00 0.192±0.00 0.026±0.00 0.152±0.00 0.115±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167623 Cdh18-005 protein_coding Mus_musculus 0 1781
ENSMUST00000165614 Cdh18-004 protein_coding Mus_musculus 0 1443
ENSMUST00000164787 Cdh18-001 protein_coding Mus_musculus 0 1443
ENSMUST00000040427 Cdh18-003 retained_intron Mus_musculus 0 1443
ENSMUST00000163361 Cdh18-006 protein_coding Mus_musculus 0 1044
ENSMUST00000170626 Cdh18-002 retained_intron Mus_musculus 3e-20 104
ENSDART00000054552 CDH8-201 protein_coding Danio_rerio 2e-17 95
ENSMUST00000067784 Cdh24-201 protein_coding Mus_musculus 0.00000000000003 84

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