Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	cadherin 18, type 2
ENST00000507958	CDH18-005	ENSG00000145526	9606	-	5:19473048-20575873	protein_coding
Homo sapiens EnsemblGRCh38 Genome Exciting message Genes Structures from Ensembl Connecting Transcripts Structures from Ensembl Connecting Powered by Dalliance 0.11.11

Expression Patterns

Transcript ID	Adipose	Adrenal	Breast	Colon	Heart	Kidney	Liver	Lung	Ovary	Placenta
ENST00000507958	0.025±0.00	0.034±0.00	0.026±0.00	0.006±0.00	0.013±0.00	0.019±0.00	0.006±0.00	0.010±0.00	0.009±0.00	0.050±0.00

Conserved Regions
Gene is not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005509	IEA	calcium ion binding
GO:0005886	TAS	plasma membrane
GO:0007156	IEA	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020	IEA	membrane
GO:0016021	IEA	integral component of membrane
GO:0034329	TAS	cell junction assembly
GO:0034332	TAS	adherens junction organization
GO:0045216	TAS	cell-cell junction organization

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000164787	Cdh18-001	protein_coding	Mus_musculus	0	3105
ENSMUST00000040427	Cdh18-003	retained_intron	Mus_musculus	0	2106
ENSMUST00000165614	Cdh18-004	protein_coding	Mus_musculus	0	1975
ENSMUST00000167623	Cdh18-005	protein_coding	Mus_musculus	0	1443
ENSMUST00000163361	Cdh18-006	protein_coding	Mus_musculus	0	1406
ENSDART00000025562	cdh18-002	protein_coding	Danio_rerio	0	503
ENSMUST00000170626	Cdh18-002	retained_intron	Mus_musculus	0	466
ENSDART00000054552	CDH8-201	protein_coding	Danio_rerio	4e-17	95
ENSMUST00000067784	Cdh24-201	protein_coding	Mus_musculus	0.00000000000008	84
ENSMUST00000034431	Tmem170-201	protein_coding	Mus_musculus	0.0000000002	73

Loading