C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 18, type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507958 CDH18-005 ENSG00000145526 9606 - 5:19473048-20575873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000507958
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000507958 0.025±0.00 0.034±0.00 0.026±0.00 0.006±0.00 0.013±0.00 0.019±0.00 0.006±0.00 0.010±0.00 0.009±0.00 0.050±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164787 Cdh18-001 protein_coding Mus_musculus 0 3105
ENSMUST00000040427 Cdh18-003 retained_intron Mus_musculus 0 2106
ENSMUST00000165614 Cdh18-004 protein_coding Mus_musculus 0 1975
ENSMUST00000167623 Cdh18-005 protein_coding Mus_musculus 0 1443
ENSMUST00000163361 Cdh18-006 protein_coding Mus_musculus 0 1406
ENSDART00000025562 cdh18-002 protein_coding Danio_rerio 0 503
ENSMUST00000170626 Cdh18-002 retained_intron Mus_musculus 0 466
ENSDART00000054552 CDH8-201 protein_coding Danio_rerio 4e-17 95
ENSMUST00000067784 Cdh24-201 protein_coding Mus_musculus 0.00000000000008 84
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000002 73

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