C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040420 Cdh18 10090 + 15:22549022-23474418 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040427 Cdh18-003 23036463-23446414 retained_intron
  ENSMUST00000163361 Cdh18-006 22549022-23400567 protein_coding
  ENSMUST00000164787 Cdh18-001 23036463-23474418 protein_coding
  ENSMUST00000165614 Cdh18-004 23173702-23474065 protein_coding
  ENSMUST00000167623 Cdh18-005 23173864-23474029 protein_coding
  ENSMUST00000170626 Cdh18-002 23036455-23175141 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000040427ENSMUST00000163361ENSMUST00000164787ENSMUST00000165614ENSMUST00000167623ENSMUST00000170626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000040427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A
ENSMUST00000163361 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164787 N/A 0.157±0.06 0.387±0.13 2.104±1.16 0.053±0.03 0.058±0.03 0.022±0.01 0.059±0.05 0.021±0.00 0.066±0.01 0.013±0.01 0.687±0.33
ENSMUST00000165614 N/A N/A N/A N/A N/A N/A N/A 0.021±0.01 N/A N/A 0.018±0.01 N/A
ENSMUST00000167623 0.064±0.00 N/A N/A N/A 0.077±0.00 N/A N/A 0.030±0.03 N/A 0.039±0.00 0.021±0.01 0.257±0.00
ENSMUST00000170626 N/A 0.100±0.01 N/A N/A 0.192±0.13 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XA CIL_0003XA_0003 CGP 15:21111452-23474418

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061371 cdh18 cadherin 18, type 2 protein_coding Danio_rerio
ENSDARG00000067692 CDH18 (2 of 2) cadherin 18, type 2 protein_coding Danio_rerio
ENSG00000145526 CDH18 cadherin 18, type 2 protein_coding Homo_sapiens

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