C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145782 ATG12 9606 - 5:115828200-115841858 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379594 ATG12-007 115831546-115841837 nonsense_mediated_decay
  ENST00000500945 ATG12-003 115830673-115841565 protein_coding
  ENST00000505252 ATG12-005 115830341-115834352 retained_intron
  ENST00000505993 ATG12-009 115831584-115841565 nonsense_mediated_decay
  ENST00000507793 ATG12-013 115831275-115833666 retained_intron
  ENST00000508464 ATG12-012 115831488-115838312 retained_intron
  ENST00000509598 ATG12-004 115831582-115839494 processed_transcript
  ENST00000509910 ATG12-001 115828200-115841858 protein_coding
  ENST00000511984 ATG12-011 115831514-115837781 retained_intron
  ENST00000513167 ATG12-008 115831720-115841544 nonsense_mediated_decay
  ENST00000513292 ATG12-014 115831479-115835161 processed_transcript
  ENST00000513322 ATG12-002 115831512-115841823 nonsense_mediated_decay
  ENST00000514775 ATG12-010 115840552-115841559 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000500945ENST00000505252ENST00000509910ENST00000511984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000500945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.039±0.00 N/A N/A N/A
ENST00000505252 N/A N/A N/A N/A N/A 2.164±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509910 3.746±0.00 4.061±0.00 1.621±0.00 6.267±1.31 3.590±0.38 3.854±1.14 2.007±0.97 2.879±0.63 4.055±1.41 3.138±1.02 1.121±0.09 3.848±1.11 3.528±0.50 4.190±0.79
ENST00000511984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.576±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0001 CGP 5:115804733-115841858
CIL_0004L6 CIL_0004L6_0001 CGP 5:115828200-115914081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0000422 IBA mitochondrion degradation
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006501 IBA C-terminal protein lipidation
GO:0006914 IEA autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0016020 IEA membrane
GO:0019776 IBA Atg8 ligase activity
GO:0032480 TAS negative regulation of type I interferon production
GO:0034045 ISS pre-autophagosomal structure membrane
GO:0034274 IBA Atg12-Atg5-Atg16 complex
GO:0043234 IEA protein complex
GO:0044804 IBA nucleophagy
GO:0045087 TAS innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069545 atg12 ATG12 autophagy related 12 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000032905 Atg12 autophagy related 12 protein_coding Mus_musculus

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