C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004L6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145782-ENSG00000177879 CGP 9606 5:115828200-115914081
GeneTranscriptPositionBiotype
ENSG00000177879 (AP3S1)
adaptor-related protein complex 3, sigma 1 subunit 		ENST00000316788 (AP3S1-001) 115841481-115914081 protein_coding
ENST00000395548 (AP3S1-003) 115841997-115914011 retained_intron
ENST00000505423 (AP3S1-006) 115895087-115913900 processed_transcript
ENST00000506430 (AP3S1-008) 115841958-115913457 nonsense_mediated_decay
ENST00000507436 (AP3S1-007) 115866661-115895162 retained_intron
ENST00000509055 (AP3S1-005) 115842487-115870131 retained_intron
ENST00000514118 (AP3S1-004) 115841592-115870131 processed_transcript
ENST00000515066 (AP3S1-002) 115841946-115904088 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0004L6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032905-ENSMUSG00000024480 CGP 10090 18:46732417-46790826
GeneTranscriptPositionBiotype
ENSMUSG00000024480 (Ap3s1)
adaptor-related protein complex 3, sigma 1 subunit 		ENSMUST00000025357 (Ap3s1-201) 46741917-46790826 protein_coding
ENSMUSG00000032905 (Atg12)
autophagy related 12 		ENSMUST00000035648 (Atg12-201) 46732417-46741579 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L6_0001ENSG00000177879ENST00000316788ENST00000395548ENST00000505423ENST00000506430ENST00000507436ENST00000509055ENST00000514118ENST00000515066CIL_0004L6_0002ENSMUSG00000024480ENSMUST00000025357ENSMUSG00000032905ENSMUST00000035648
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004L6_0001ENSG00000177879ENST00000316788ENST00000395548ENST00000505423ENST00000506430CIL_0004L6_0002ENSMUSG00000024480ENSMUST00000025357ENSMUSG00000032905ENSMUST00000035648
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177879 ENST00000316788 19.097±0.00 15.584±0.00 N/A 15.078±0.00 16.069±0.00 24.276±0.00 7.549±0.00 10.245±0.00 7.287±0.00 22.687±0.00 4.918±0.00 22.540±14.77 28.690±3.17 20.712±9.81
ENST00000395548 17.277±0.00 11.893±0.00 N/A 12.974±0.00 11.856±0.26 8.526±3.34 2.561±0.00 5.763±0.13 10.466±5.63 6.608±0.00 2.462±0.00 10.326±0.56 N/A 14.719±1.74
ENST00000505423 N/A N/A N/A 21.025±0.00 17.395±0.00 N/A N/A 12.061±0.00 7.601±0.00 N/A 7.152±0.00 N/A N/A N/A
ENST00000506430 N/A N/A 10.149±0.00 18.795±0.00 19.036±0.00 10.283±0.00 4.679±0.00 9.112±0.00 N/A 10.197±0.00 N/A 11.720±0.00 16.262±0.00 26.525±0.00
ENST00000507436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024480 ENSMUST00000025357 14.299±2.97 63.436±7.44 7.718±0.84 16.691±7.37 11.407±8.30 16.967±2.38 1.706±0.11 5.980±1.95 10.106±1.90 4.735±2.70 2.065±0.37 17.077±6.02 23.192±6.64 18.270±2.26
ENSMUSG00000032905 ENSMUST00000035648 20.746±4.45 10.320±0.45 21.310±0.41 18.514±6.12 14.349±2.85 12.243±1.17 6.543±1.97 17.986±1.19 10.163±1.72 10.645±4.13 7.879±0.49 17.086±4.75 29.853±8.94 9.781±3.20

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