C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TNFAIP3 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145901 TNIP1 9606 - 5:151029945-151093577 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315050 TNIP1-002 151029949-151087158 protein_coding
  ENST00000389378 TNIP1-201 151029947-151081084 protein_coding
  ENST00000517329 TNIP1-015 151034496-151035654 retained_intron
  ENST00000517504 TNIP1-018 151029949-151039198 protein_coding
  ENST00000518977 TNIP1-005 151030581-151081074 protein_coding
  ENST00000519339 TNIP1-009 151030581-151063747 nonsense_mediated_decay
  ENST00000520695 TNIP1-012 151060322-151081034 protein_coding
  ENST00000520931 TNIP1-006 151029945-151081016 protein_coding
  ENST00000521001 TNIP1-011 151060354-151093577 protein_coding
  ENST00000521423 TNIP1-014 151032050-151049903 processed_transcript
  ENST00000521591 TNIP1-004 151030581-151081074 protein_coding
  ENST00000521782 TNIP1-016 151042898-151046361 retained_intron
  ENST00000522100 TNIP1-010 151045866-151087166 protein_coding
  ENST00000522226 TNIP1-001 151030492-151087660 protein_coding
  ENST00000522574 TNIP1-017 151030484-151037438 retained_intron
  ENST00000522926 TNIP1-013 151078403-151081015 processed_transcript
  ENST00000523200 TNIP1-007 151030689-151065095 protein_coding
  ENST00000523338 TNIP1-003 151029949-151087158 protein_coding
  ENST00000524280 TNIP1-008 151030619-151065095 protein_coding
  ENST00000610535 TNIP1-202 151029947-151081084 protein_coding
  ENST00000610874 TNIP1-203 151029947-151081084 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315050ENST00000389378ENST00000517504ENST00000518977ENST00000520931ENST00000521591ENST00000522100ENST00000523200ENST00000523338ENST00000524280ENST00000610535ENST00000610874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315050 N/A N/A N/A N/A 2.001±0.00 N/A 8.295±0.00 N/A N/A 12.697±10.73 10.046±0.00 8.412±1.91 10.701±3.79 2.418±0.00
ENST00000389378 N/A 8.431±0.00 N/A N/A 10.423±8.79 N/A 10.308±8.16 N/A 4.353±0.00 26.106±0.00 N/A 5.902±0.87 5.363±0.24 5.583±0.00
ENST00000517504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.535±0.00 28.368±0.00 12.498±0.00
ENST00000518977 N/A N/A 4.571±0.00 N/A N/A 4.857±0.00 1.716±0.00 6.327±0.00 N/A 2.067±0.00 N/A N/A N/A N/A
ENST00000520931 24.028±0.00 20.924±0.00 N/A 11.479±0.00 61.467±0.00 28.674±0.00 15.325±0.00 21.607±0.00 17.489±0.00 40.622±0.00 53.434±0.00 10.354±5.43 6.556±2.01 7.959±5.20
ENST00000521591 N/A N/A 2.881±0.00 2.663±0.00 4.570±0.00 N/A 2.294±0.00 6.071±0.00 5.637±0.00 2.438±0.00 4.419±0.00 6.134±2.63 6.875±0.00 4.495±0.00
ENST00000522100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.099±0.00 N/A
ENST00000523200 N/A N/A 2.180±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523338 18.382±0.00 20.978±0.00 N/A 3.831±1.59 49.939±0.00 23.748±0.00 N/A 12.674±0.00 6.235±0.00 11.838±9.90 21.071±0.00 1.936±0.00 3.933±0.00 10.876±0.00
ENST00000524280 N/A N/A N/A N/A 5.491±0.00 6.436±0.00 1.894±0.00 N/A N/A 2.412±0.00 N/A 3.801±0.00 N/A N/A
ENST00000610535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.836±0.00 N/A N/A N/A
ENST00000610874 17.908±0.00 N/A N/A N/A 23.308±0.00 N/A N/A 12.346±0.00 9.530±0.00 N/A 19.127±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KS CIL_0001KS_0001 CGP 5:151020438-151093577
CIL_0001KR CIL_0001KR_0001 CGP 5:151029945-151157882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002755 ISS MyD88-dependent toll-like receptor signaling pathway
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 TAS intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006412 TAS translation
GO:0006952 TAS defense response
GO:0006954 IEA inflammatory response
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0009101 IDA glycoprotein biosynthetic process
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045071 TAS negative regulation of viral genome replication
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0050729 ISS positive regulation of inflammatory response
GO:0051019 IDA mitogen-activated protein kinase binding
GO:0070373 IDA negative regulation of ERK1 and ERK2 cascade
GO:0085032 IDA modulation by symbiont of host I-kappaB kinase/NF-kappaB cascade

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015653 tnip1 TNFAIP3 interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000020400 Tnip1 TNFAIP3 interacting protein 1 protein_coding Mus_musculus

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