C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNFAIP3 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000523338 TNIP1-003 ENSG00000145901 9606 - 5:151029949-151087158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000523338
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000523338 18.382±0.00 20.978±0.00 3.831±1.59 49.939±0.00 23.748±0.00 12.674±0.00 6.235±0.00 11.838±9.90 21.071±0.00 1.936±0.00 3.933±0.00 10.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KS CIL_0001KS_0001 CGP 5:151020438-151093577
CIL_0001KR CIL_0001KR_0001 CGP 5:151029945-151157882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002755 ISS MyD88-dependent toll-like receptor signaling pathway
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 TAS intracellular
GO:0005634 IEA nucleus
GO:0006412 TAS translation
GO:0006952 TAS defense response
GO:0006954 IEA inflammatory response
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0009101 IDA glycoprotein biosynthetic process
GO:0043124 IDA negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045071 TAS negative regulation of viral genome replication
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0050729 ISS positive regulation of inflammatory response
GO:0051019 IDA mitogen-activated protein kinase binding
GO:0070373 IDA negative regulation of ERK1 and ERK2 cascade
GO:0085032 IDA modulation by symbiont of host I-kappaB kinase/NF-kappaB cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102730 Tnip1-007 protein_coding Mus_musculus 0 1652
ENSMUST00000108889 Tnip1-201 protein_coding Mus_musculus 0 1585
ENSMUST00000108885 Tnip1-008 protein_coding Mus_musculus 0 1585
ENSMUST00000102731 Tnip1-003 protein_coding Mus_musculus 0 1585
ENSMUST00000108886 Tnip1-002 protein_coding Mus_musculus 0 1585
ENSMUST00000018482 Tnip1-001 protein_coding Mus_musculus 0 1585
ENSMUST00000124304 Tnip1-006 processed_transcript Mus_musculus 0 688
ENSMUST00000126703 Tnip1-004 protein_coding Mus_musculus 0 512
ENSMUST00000155316 Tnip1-005 protein_coding Mus_musculus 0 351
ENSMUST00000132224 Tnip1-011 retained_intron Mus_musculus 0 272
ENSDART00000115072 tnip1-201 protein_coding Danio_rerio 2e-28 132
ENSDART00000020961 tnip1-001 protein_coding Danio_rerio 2e-28 132

Loading