C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: kelch-like family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146021 KLHL3 9606 - 5:137617500-137736090 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309755 KLHL3-001 137617500-137736090 protein_coding
  ENST00000447439 KLHL3-009 137621221-137629943 retained_intron
  ENST00000502381 KLHL3-007 137634044-137673897 processed_transcript
  ENST00000504208 KLHL3-005 137621939-137706427 nonsense_mediated_decay
  ENST00000504496 KLHL3-006 137660711-137692685 processed_transcript
  ENST00000505853 KLHL3-002 137637294-137736015 protein_coding
  ENST00000506491 KLHL3-004 137617500-137706436 protein_coding
  ENST00000506873 KLHL3-008 137621502-137672927 processed_transcript
  ENST00000508657 KLHL3-003 137617500-137721310 protein_coding
  ENST00000509694 KLHL3-014 137617659-137628680 retained_intron
  ENST00000510529 KLHL3-013 137677417-137698383 processed_transcript
  ENST00000512977 KLHL3-010 137706050-137735858 processed_transcript
  ENST00000514149 KLHL3-011 137671767-137673851 processed_transcript
  ENST00000515334 KLHL3-012 137672754-137706139 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309755ENST00000447439ENST00000504208ENST00000505853ENST00000506491ENST00000508657ENST00000510529
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309755 0.812±0.00 1.274±0.00 1.373±0.45 0.500±0.00 0.141±0.06 1.931±0.43 N/A 0.288±0.00 N/A N/A 0.404±0.17 0.117±0.01 0.900±0.63
ENST00000447439 N/A N/A N/A N/A 0.211±0.00 N/A N/A 0.855±0.00 N/A N/A 0.868±0.00 N/A N/A
ENST00000504208 N/A N/A N/A N/A N/A N/A N/A 0.798±0.00 N/A N/A N/A N/A N/A
ENST00000505853 N/A N/A N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.417±0.00 N/A N/A N/A
ENST00000506491 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A 0.985±0.00
ENST00000508657 N/A N/A 0.932±0.00 0.380±0.00 N/A N/A N/A N/A 0.810±0.00 N/A N/A N/A 0.179±0.00
ENST00000510529 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.439±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P1 CIL_0005P1_0001 CGP 5:136975298-137736090
CIL_0005OY CIL_0005OY_0001 CGP 5:137617500-137754376

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005198 TAS structural molecule activity
GO:0005515 IPI:IEA protein binding
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0016567 TAS protein ubiquitination
GO:0031463 TAS Cul3-RING ubiquitin ligase complex
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0050801 IMP ion homeostasis
GO:0070294 IMP renal sodium ion absorption
GO:0070936 IDA protein K48-linked ubiquitination
GO:0072156 IMP distal tubule morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056647 KLHL3 Kelch-like protein 3 protein_coding Danio_rerio
ENSMUSG00000014164 Klhl3 kelch-like 3 protein_coding Mus_musculus

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