C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147164 SNX12 9606 - X:71056332-71073426 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276105 SNX12-002 71060870-71068403 protein_coding
  ENST00000374274 SNX12-001 71059246-71068423 protein_coding
  ENST00000465030 SNX12-003 71060516-71068388 processed_transcript
  ENST00000483560 SNX12-005 71059244-71062931 processed_transcript
  ENST00000490561 SNX12-004 71059893-71068323 processed_transcript
  ENST00000622259 SNX12-201 71056332-71068448 protein_coding
  ENST00000622277 SNX12-202 71059249-71073426 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374274ENST00000483560ENST00000490561ENST00000622259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374274 22.630±0.00 20.535±0.00 2.558±0.00 12.311±6.40 8.815±7.00 10.507±9.87 4.999±3.40 9.452±8.89 3.621±2.08 8.369±7.41 4.139±2.65 20.828±10.67 24.790±1.56 17.022±5.52
ENST00000483560 N/A N/A N/A N/A N/A N/A 5.271±0.00 N/A N/A 2.004±0.00 N/A 19.870±0.00 14.753±0.00 7.544±0.00
ENST00000490561 N/A N/A 3.511±0.00 N/A 3.489±0.00 4.023±0.00 1.531±0.00 5.194±0.00 8.204±0.00 1.355±0.00 5.714±0.00 2.822±0.00 N/A N/A
ENST00000622259 N/A N/A N/A N/A N/A 4.548±0.00 N/A 3.755±0.00 N/A 3.500±0.00 N/A 3.048±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B5 CIL_0002B5_0001 CGP X:70925582-71073426
CIL_00009X CIL_00009X_0001 CGP X:71056332-71103535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IBA endosome
GO:0005769 IDA early endosome
GO:0006886 IBA intracellular protein transport
GO:0010629 IMP negative regulation of gene expression
GO:0010955 IDA negative regulation of protein processing
GO:0016020 IEA membrane
GO:0019899 IPI enzyme binding
GO:0030100 IMP regulation of endocytosis
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0042177 IDA negative regulation of protein catabolic process
GO:0051224 IDA negative regulation of protein transport
GO:0070062 IDA extracellular vesicular exosome
GO:2000642 IDA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019060 snx12 sorting nexin 12 protein_coding Danio_rerio
ENSMUSG00000046032 Snx12 sorting nexin 12 protein_coding Mus_musculus

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