C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046032 Snx12 10090 - X:101097786-101222563 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077876 Snx12-001 101211959-101222563 protein_coding
  ENSMUST00000120389 Snx12-002 101211959-101222549 protein_coding
  ENSMUST00000130826 Snx12-005 101213487-101214539 processed_transcript
  ENSMUST00000156473 Snx12-003 101097786-101222553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077876ENSMUST00000120389ENSMUST00000156473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077876 4.781±0.88 8.894±2.36 N/A N/A 3.624±0.38 3.286±1.11 2.434±0.17 5.838±1.21 3.813±1.81 3.082±0.48 N/A 3.589±0.25 10.079±2.50 0.800±0.09
ENSMUST00000120389 6.422±0.44 4.922±1.43 15.944±0.61 11.364±4.89 4.731±1.83 6.306±1.50 4.998±0.76 6.370±0.97 5.718±1.65 6.547±1.00 7.507±0.69 7.047±1.73 9.119±4.67 1.034±0.44
ENSMUST00000156473 N/A 4.293±2.38 N/A 2.561±0.00 N/A 1.897±0.00 N/A N/A N/A N/A N/A 4.029±1.59 6.919±2.72 0.641±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B5 CIL_0002B5_0002 CGP X:101079210-101222563
CIL_00009X CIL_00009X_0002 CGP X:101097786-101260873

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005768 IBA endosome
GO:0005769 IEA early endosome
GO:0006886 IBA intracellular protein transport
GO:0010629 IEA negative regulation of gene expression
GO:0010955 IEA negative regulation of protein processing
GO:0019899 IEA enzyme binding
GO:0030100 IEA regulation of endocytosis
GO:0035091 IBA phosphatidylinositol binding
GO:0042177 IEA negative regulation of protein catabolic process
GO:0051224 IEA negative regulation of protein transport
GO:0070062 IEA extracellular vesicular exosome
GO:2000642 IEA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019060 snx12 sorting nexin 12 protein_coding Danio_rerio
ENSG00000147164 SNX12 sorting nexin 12 protein_coding Homo_sapiens

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