C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374274 SNX12-001 ENSG00000147164 9606 - X:71059246-71068423 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374274 22.630±0.00 20.535±0.00 2.558±0.00 12.311±6.40 8.815±7.00 10.507±9.87 4.999±3.40 9.452±8.89 3.621±2.08 8.369±7.41 4.139±2.65 20.828±10.67 24.790±1.56 17.022±5.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B5 CIL_0002B5_0001 CGP X:70925582-71073426
CIL_00009X CIL_00009X_0001 CGP X:71056332-71103535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IBA endosome
GO:0005769 IDA early endosome
GO:0006886 IBA intracellular protein transport
GO:0010629 IMP negative regulation of gene expression
GO:0010955 IDA negative regulation of protein processing
GO:0016020 IEA membrane
GO:0019899 IPI enzyme binding
GO:0030100 IMP regulation of endocytosis
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0042177 IDA negative regulation of protein catabolic process
GO:0051224 IDA negative regulation of protein transport
GO:0070062 IDA extracellular vesicular exosome
GO:2000642 IDA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120389 Snx12-002 protein_coding Mus_musculus 0 1716
ENSMUST00000077876 Snx12-001 protein_coding Mus_musculus 0 883
ENSMUST00000156473 Snx12-003 protein_coding Mus_musculus 0 883
ENSMUST00000130826 Snx12-005 processed_transcript Mus_musculus 0 726

Loading