C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002B5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165349-ENSG00000147164 CGP 9606 X:70925582-71073426
GeneTranscriptPositionBiotype
ENSG00000165349 (SLC7A3)
solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
ENST00000298085 (SLC7A3-002) 70925588-70931125 protein_coding
ENST00000374299 (SLC7A3-001) 70925582-70931096 protein_coding
ENSG00000212605 (RNU1-56P)
RNA, U1 small nuclear 56, pseudogene
ENST00000391303 (RNU1-56P-201) 71020275-71020438 snRNA
ENSG00000227536 (SOCS5P4)
suppressor of cytokine signaling 5 pseudogene 4
ENST00000454743 (SOCS5P4-001) 71043214-71045470 processed_pseudogene
ENSG00000229324 (NUTF2P7)
nuclear transport factor 2 pseudogene 7
ENST00000453086 (NUTF2P7-001) 71016531-71016905 processed_pseudogene
ENSG00000230629 (RPS23P8)
ribosomal protein S23 pseudogene 8
ENST00000429775 (RPS23P8-001) 70962964-70963293 processed_pseudogene
CIL_0002B5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031297-ENSMUSG00000046032 CGP 10090 X:101079210-101222563
GeneTranscriptPositionBiotype
ENSMUSG00000031297 (Slc7a3)
solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
ENSMUST00000073927 (Slc7a3-201) 101079222-101085372 protein_coding
ENSMUST00000101362 (Slc7a3-002) 101079221-101085352 protein_coding
ENSMUST00000113710 (Slc7a3-001) 101079222-101086020 protein_coding
ENSMUST00000126282 (Slc7a3-006) 101079806-101084181 processed_transcript
ENSMUST00000138162 (Slc7a3-003) 101079210-101085405 retained_intron
ENSMUST00000144410 (Slc7a3-005) 101081570-101082233 retained_intron
ENSMUST00000151922 (Slc7a3-004) 101081758-101082459 retained_intron
ENSMUSG00000046032 (Snx12)
sorting nexin 12
ENSMUST00000077876 (Snx12-001) 101211959-101222563 protein_coding
ENSMUST00000120389 (Snx12-002) 101211959-101222549 protein_coding
ENSMUST00000130826 (Snx12-005) 101213487-101214539 processed_transcript
ENSMUST00000156473 (Snx12-003) 101097786-101222553 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B5_0001ENSG00000165349ENST00000298085ENST00000374299ENSG00000212605ENST00000391303ENSG00000227536ENST00000454743ENSG00000229324ENST00000453086ENSG00000230629ENST00000429775CIL_0002B5_0002ENSMUSG00000031297ENSMUST00000073927ENSMUST00000101362ENSMUST00000113710ENSMUST00000126282ENSMUST00000138162ENSMUST00000144410ENSMUST00000151922ENSMUSG00000046032ENSMUST00000077876ENSMUST00000120389ENSMUST00000130826ENSMUST00000156473
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B5_0001ENSG00000165349ENST00000298085ENST00000374299ENSG00000212605ENST00000391303ENSG00000227536ENST00000454743ENSG00000229324ENST00000453086ENSG00000230629ENST00000429775CIL_0002B5_0002ENSMUSG00000031297ENSMUST00000073927ENSMUST00000101362ENSMUST00000113710ENSMUST00000126282ENSMUST00000138162ENSMUST00000144410ENSMUST00000151922ENSMUSG00000046032ENSMUST00000077876ENSMUST00000120389ENSMUST00000156473
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165349 ENST00000298085 N/A 0.008±0.00 N/A 0.807±0.00 0.187±0.00 0.092±0.00 N/A 0.049±0.00 0.026±0.00 N/A N/A 0.454±0.29 0.022±0.00 1.201±0.00
ENST00000374299 N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.005±0.00 N/A
ENSG00000212605 ENST00000391303 N/A 0.373±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227536 ENST00000454743 0.064±0.00 0.193±0.00 N/A 0.044±0.00 0.062±0.00 0.075±0.02 0.007±0.00 0.140±0.00 N/A 0.333±0.00 N/A 0.095±0.03 0.100±0.04 0.058±0.00
ENSG00000229324 ENST00000453086 N/A 0.043±0.00 N/A N/A N/A 0.120±0.00 N/A N/A 0.038±0.00 N/A N/A 0.127±0.00 N/A N/A
ENSG00000230629 ENST00000429775 0.172±0.00 0.265±0.00 N/A 0.651±0.56 0.571±0.31 1.216±0.98 0.232±0.19 N/A 1.000±0.84 0.875±0.79 0.405±0.14 4.320±5.71 0.286±0.06 0.138±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031297 ENSMUST00000073927 0.188±0.00 0.213±0.08 0.769±0.22 0.845±0.24 0.204±0.08 0.332±0.15 0.139±0.04 0.239±0.16 0.218±0.22 0.298±0.15 0.039±0.02 0.817±0.30 1.438±0.30 N/A
ENSMUST00000101362 0.270±0.08 N/A 0.422±0.00 0.272±0.00 N/A N/A N/A N/A 0.207±0.07 0.462±0.00 N/A N/A 0.243±0.04 N/A
ENSMUST00000113710 0.116±0.06 0.161±0.02 0.213±0.00 0.399±0.21 N/A N/A 0.050±0.00 N/A 0.075±0.01 0.077±0.00 0.040±0.00 0.420±0.16 0.300±0.16 0.080±0.03
ENSMUST00000126282 N/A 0.503±0.28 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.354±0.45 N/A N/A
ENSMUST00000138162 0.063±0.00 0.072±0.00 N/A 0.277±0.01 0.100±0.00 0.088±0.00 0.050±0.00 0.104±0.05 0.063±0.00 0.095±0.00 0.030±0.00 0.208±0.07 0.248±0.22 0.069±0.02
ENSMUST00000144410 N/A 0.416±0.22 N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A 0.439±0.01
ENSMUST00000151922 N/A 0.594±0.00 N/A N/A N/A 0.413±0.00 N/A N/A N/A 0.343±0.03 0.099±0.01 0.846±0.17 N/A N/A
ENSMUSG00000046032 ENSMUST00000077876 4.781±0.88 8.894±2.36 N/A N/A 3.624±0.38 3.286±1.11 2.434±0.17 5.838±1.21 3.813±1.81 3.082±0.48 N/A 3.589±0.25 10.079±2.50 0.800±0.09
ENSMUST00000120389 6.422±0.44 4.922±1.43 15.944±0.61 11.364±4.89 4.731±1.83 6.306±1.50 4.998±0.76 6.370±0.97 5.718±1.65 6.547±1.00 7.507±0.69 7.047±1.73 9.119±4.67 1.034±0.44
ENSMUST00000130826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156473 N/A 4.293±2.38 N/A 2.561±0.00 N/A 1.897±0.00 N/A N/A N/A N/A N/A 4.029±1.59 6.919±2.72 0.641±0.08

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