C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Wolf-Hirschhorn syndrome candidate 1-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147548 WHSC1L1 9606 - 8:38269697-38382272 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316985 WHSC1L1-002 38316417-38382272 protein_coding
  ENST00000317025 WHSC1L1-001 38269697-38382272 protein_coding
  ENST00000433384 WHSC1L1-003 38275023-38382245 protein_coding
  ENST00000525081 WHSC1L1-007 38316855-38319291 processed_transcript
  ENST00000526050 WHSC1L1-013 38289421-38290748 retained_intron
  ENST00000527502 WHSC1L1-005 38275543-38381846 protein_coding
  ENST00000528304 WHSC1L1-012 38295796-38299794 retained_intron
  ENST00000528627 WHSC1L1-011 38319755-38326835 protein_coding
  ENST00000528828 WHSC1L1-004 38275490-38280210 retained_intron
  ENST00000529223 WHSC1L1-009 38337369-38381731 protein_coding
  ENST00000534155 WHSC1L1-008 38348096-38382227 protein_coding
  ENST00000534539 WHSC1L1-010 38348127-38380821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316985ENST00000317025ENST00000527502
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316985 8.720±0.00 3.252±0.00 4.552±0.00 6.954±0.00 4.373±0.00 1.236±0.00 1.952±0.00 3.304±1.87 5.168±0.00 3.056±2.31 7.686±2.22 7.881±2.28 7.830±0.00
ENST00000317025 1.601±0.00 2.044±0.00 3.402±0.44 2.894±0.08 2.073±0.00 1.462±0.48 1.537±0.39 2.162±1.93 3.305±0.00 0.924±0.46 3.892±0.73 1.696±0.44 2.621±0.07
ENST00000527502 N/A N/A N/A N/A N/A N/A N/A N/A 3.812±0.00 0.631±0.00 3.507±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003YZ CIL_0003YZ_0002 CGP 8:38225218-38275558
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0003Z2 CIL_0003Z2_0002 CGP 8:38263130-38382272
CIL_0003Z1 CIL_0003Z1_0002 CGP 8:38269697-38409527

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016571 IDA histone methylation
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046976 IEA histone methyltransferase activity (H3-K27 specific)
GO:0051568 IEA histone H3-K4 methylation
GO:0070734 IEA histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062765 whsc1l1 Wolf-Hirschhorn syndrome candidate 1-like 1 protein_coding Danio_rerio
ENSMUSG00000054823 Whsc1l1 Wolf-Hirschhorn syndrome candidate 1-like 1 (human) protein_coding Mus_musculus

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