C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317025 WHSC1L1-001 ENSG00000147548 9606 - 8:38269697-38382272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317025
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317025 1.601±0.00 2.044±0.00 3.402±0.44 2.894±0.08 2.073±0.00 1.462±0.48 1.537±0.39 2.162±1.93 3.305±0.00 0.924±0.46 3.892±0.73 1.696±0.44 2.621±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003YZ CIL_0003YZ_0002 CGP 8:38225218-38275558
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0003Z2 CIL_0003Z2_0002 CGP 8:38263130-38382272
CIL_0003Z1 CIL_0003Z1_0002 CGP 8:38269697-38409527

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IC:IEA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016571 IDA histone methylation
GO:0018024 IDA:IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046976 IEA histone methyltransferase activity (H3-K27 specific)
GO:0051568 IEA histone H3-K4 methylation
GO:0070734 IEA histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084026 Whsc1l1-201 protein_coding Mus_musculus 0 4652
ENSMUST00000142395 Whsc1l1-005 protein_coding Mus_musculus 0 4652
ENSMUST00000139966 Whsc1l1-006 protein_coding Mus_musculus 0 2564
ENSMUST00000153597 Whsc1l1-007 protein_coding Mus_musculus 0 1847
ENSMUST00000146919 Whsc1l1-003 protein_coding Mus_musculus 0 1788
ENSMUST00000155861 Whsc1l1-001 protein_coding Mus_musculus 0 1788
ENSMUST00000136107 Whsc1l1-002 retained_intron Mus_musculus 0 1759
ENSMUST00000143445 Whsc1l1-004 retained_intron Mus_musculus 0 1476
ENSMUST00000129959 Whsc1l1-008 retained_intron Mus_musculus 0 843
ENSDART00000138045 whsc1l1-001 protein_coding Danio_rerio 0 211
ENSDART00000091115 whsc1l1-201 protein_coding Danio_rerio 1e-31 145

Loading