C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Wolf-Hirschhorn syndrome candidate 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316985 WHSC1L1-002 ENSG00000147548 9606 - 8:38316417-38382272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316985
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316985 8.720±0.00 3.252±0.00 4.552±0.00 6.954±0.00 4.373±0.00 1.236±0.00 1.952±0.00 3.304±1.87 5.168±0.00 3.056±2.31 7.686±2.22 7.881±2.28 7.830±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003YZ CIL_0003YZ_0002 CGP 8:38225218-38275558
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0003Z2 CIL_0003Z2_0002 CGP 8:38263130-38382272
CIL_0003Z1 CIL_0003Z1_0002 CGP 8:38269697-38409527

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016571 IDA histone methylation
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146919 Whsc1l1-003 protein_coding Mus_musculus 0 2158
ENSMUST00000155861 Whsc1l1-001 protein_coding Mus_musculus 0 2158
ENSMUST00000084026 Whsc1l1-201 protein_coding Mus_musculus 0 1788
ENSMUST00000139966 Whsc1l1-006 protein_coding Mus_musculus 0 1788
ENSMUST00000142395 Whsc1l1-005 protein_coding Mus_musculus 0 1788
ENSMUST00000136107 Whsc1l1-002 retained_intron Mus_musculus 0 1759
ENSMUST00000143445 Whsc1l1-004 retained_intron Mus_musculus 0 1476
ENSMUST00000141781 Whsc1l1-009 retained_intron Mus_musculus 0 1044
ENSDART00000138045 whsc1l1-001 protein_coding Danio_rerio 0 211
ENSDART00000091115 whsc1l1-201 protein_coding Danio_rerio 4e-32 145

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