C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054823 Whsc1l1 10090 + 8:25601601-25719667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084026 Whsc1l1-201 25640284-25719667 protein_coding
  ENSMUST00000129959 Whsc1l1-008 25698528-25708080 retained_intron
  ENSMUST00000136107 Whsc1l1-002 25602284-25674907 retained_intron
  ENSMUST00000139966 Whsc1l1-006 25602284-25714970 protein_coding
  ENSMUST00000141781 Whsc1l1-009 25674436-25677950 retained_intron
  ENSMUST00000142395 Whsc1l1-005 25602284-25719667 protein_coding
  ENSMUST00000143445 Whsc1l1-004 25602319-25663599 retained_intron
  ENSMUST00000146919 Whsc1l1-003 25602284-25677972 protein_coding
  ENSMUST00000147935 Whsc1l1-010 25699958-25700984 retained_intron
  ENSMUST00000153597 Whsc1l1-007 25694133-25714970 protein_coding
  ENSMUST00000155861 Whsc1l1-001 25601601-25677214 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084026ENSMUST00000136107ENSMUST00000139966ENSMUST00000142395ENSMUST00000146919ENSMUST00000153597ENSMUST00000155861
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084026 N/A N/A N/A N/A N/A N/A N/A N/A 0.889±0.27 N/A N/A 3.802±0.00 N/A N/A
ENSMUST00000136107 2.379±0.61 8.669±5.21 2.976±0.00 10.964±1.27 3.961±1.68 2.680±0.93 N/A 2.227±0.08 5.223±0.72 3.039±0.36 0.590±0.03 3.898±1.05 9.177±2.24 1.538±0.00
ENSMUST00000139966 N/A N/A N/A 4.963±0.00 N/A N/A N/A N/A N/A N/A N/A 1.882±0.75 5.377±0.00 2.311±0.00
ENSMUST00000142395 2.572±0.97 2.161±0.32 5.049±0.00 7.592±2.72 3.970±0.23 2.335±0.27 0.857±0.50 3.438±1.18 2.420±1.28 4.063±0.37 0.636±0.17 3.032±0.91 7.397±1.74 1.614±0.79
ENSMUST00000146919 2.082±0.10 2.940±0.78 2.946±0.00 N/A 3.210±1.19 2.640±0.58 0.956±0.06 2.593±0.37 1.862±0.24 2.659±0.10 1.139±0.25 2.734±0.79 7.160±0.50 1.538±0.25
ENSMUST00000153597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.786±1.21
ENSMUST00000155861 N/A N/A N/A N/A 5.758±0.00 2.366±0.30 N/A N/A 2.520±0.50 N/A N/A 1.697±0.10 9.782±3.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D9 CIL_0008D9_0002 VISTA 8:25042689-25644335
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016571 IEA histone methylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046976 IDA histone methyltransferase activity (H3-K27 specific)
GO:0051568 IDA histone H3-K4 methylation
GO:0070734 IDA histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062765 whsc1l1 Wolf-Hirschhorn syndrome candidate 1-like 1 protein_coding Danio_rerio
ENSG00000147548 WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 protein_coding Homo_sapiens

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