C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 55
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147573 TRIM55 9606 + 8:66126896-66175487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000276573 TRIM55-004 66127043-66174592 protein_coding
  ENST00000315962 TRIM55-001 66126896-66175487 protein_coding
  ENST00000350034 TRIM55-003 66127043-66174818 protein_coding
  ENST00000353317 TRIM55-002 66126896-66175485 protein_coding
  ENST00000517647 TRIM55-006 66152298-66175005 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000276573ENST00000315962ENST00000350034ENST00000353317ENST00000517647
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000276573 N/A 0.035±0.00 N/A 0.064±0.04 N/A 8.397±0.00 0.337±0.00 3.308±0.00 N/A 2.816±0.79 0.016±0.00 0.102±0.04 2.863±1.78
ENST00000315962 N/A N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A 1.591±0.00 N/A N/A N/A
ENST00000350034 N/A N/A 0.039±0.00 0.320±0.00 0.083±0.00 2.136±0.00 4.381±0.00 N/A 0.224±0.00 3.349±0.00 N/A N/A 4.782±0.00
ENST00000353317 0.028±0.00 N/A 0.054±0.00 N/A 0.036±0.00 9.310±0.00 0.610±0.00 3.448±0.00 0.114±0.06 N/A 0.647±0.00 N/A 2.218±0.82
ENST00000517647 N/A 0.009±0.00 N/A 0.222±0.00 N/A N/A 0.353±0.00 3.914±0.00 N/A 1.590±0.04 0.415±0.00 0.087±0.05 3.450±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DP CIL_0007DP_0002 CGP 8:66021560-66175487
CIL_0005BV CIL_0005BV_0002 CGP 8:66126896-66178725

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 NAS signal transducer activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 NAS microtubule
GO:0007165 NAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0042802 IPI identical protein binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029596 trim55a tripartite motif-containing 55a protein_coding Danio_rerio
ENSDARG00000058158 trim55b tripartite motif-containing 55b protein_coding Danio_rerio
ENSMUSG00000060913 Trim55 tripartite motif-containing 55 protein_coding Mus_musculus

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