C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sigma non-opioid intracellular receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147955 SIGMAR1 9606 - 9:34634722-34637809 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277010 SIGMAR1-001 34634722-34637771 protein_coding
  ENST00000353468 SIGMAR1-003 34634722-34637744 nonsense_mediated_decay
  ENST00000378892 SIGMAR1-002 34634722-34637732 protein_coding
  ENST00000461426 SIGMAR1-006 34635497-34637796 processed_transcript
  ENST00000477726 SIGMAR1-008 34635483-34637809 protein_coding
  ENST00000478146 SIGMAR1-005 34636751-34637412 processed_transcript
  ENST00000497006 SIGMAR1-007 34635810-34637683 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277010ENST00000353468ENST00000497006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277010 20.738±0.00 27.127±0.00 2.143±0.00 7.735±2.43 12.549±6.70 11.195±5.66 2.131±0.96 25.297±3.84 46.902±42.14 8.416±5.72 1.988±0.13 33.823±14.63 32.930±7.43 17.765±9.03
ENST00000353468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.126±0.00 N/A N/A
ENST00000497006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.719±0.00 N/A 5.811±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SN CIL_0005SN_0001 CGP 9:34621379-34637809
CIL_0004KU CIL_0004KU_0001 CGP 9:34634722-34651035

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0004985 IEA opioid receptor activity
GO:0005515 IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005783 IEA endoplasmic reticulum
GO:0005811 IEA lipid particle
GO:0005887 TAS integral component of plasma membrane
GO:0006869 IEA lipid transport
GO:0007399 IEA nervous system development
GO:0008144 TAS drug binding
GO:0008219 IEA cell death
GO:0016021 TAS integral component of membrane
GO:0030054 IEA cell junction
GO:0038003 IEA opioid receptor signaling pathway
GO:0042995 IEA cell projection
GO:0043523 IMP regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011418 sigmar1 sigma non-opioid intracellular receptor 1 protein_coding Danio_rerio
ENSMUSG00000036078 Sigmar1 sigma non-opioid intracellular receptor 1 protein_coding Mus_musculus

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