C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sigma non-opioid intracellular receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353468 SIGMAR1-003 ENSG00000147955 9606 - 9:34634722-34637744 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000353468
Transcript ID Ovary
ENST00000353468 5.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SN CIL_0005SN_0001 CGP 9:34621379-34637809
CIL_0004KU CIL_0004KU_0001 CGP 9:34634722-34651035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005635 IDA nuclear envelope
GO:0005783 IEA endoplasmic reticulum
GO:0005811 IEA lipid particle
GO:0005887 TAS integral component of plasma membrane
GO:0006869 IEA lipid transport
GO:0008144 TAS drug binding
GO:0008219 IEA cell death
GO:0016021 TAS integral component of membrane
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0043523 IMP regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059354 Sigmar1-001 protein_coding Mus_musculus 0 649
ENSMUST00000071561 Sigmar1-002 protein_coding Mus_musculus 0 521

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