C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 6, group A, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148200 NR6A1 9606 - 9:124517275-124771310 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344523 NR6A1-004 124522467-124771287 protein_coding
  ENST00000373584 NR6A1-003 124522424-124771297 protein_coding
  ENST00000416460 NR6A1-002 124522426-124771310 protein_coding
  ENST00000475178 NR6A1-005 124538092-124595808 protein_coding
  ENST00000487099 NR6A1-001 124517275-124771277 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000344523ENST00000416460ENST00000475178ENST00000487099
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000344523 N/A N/A N/A N/A 0.163±0.00 0.224±0.00 N/A N/A 0.206±0.00 N/A N/A
ENST00000416460 N/A 0.178±0.00 N/A N/A 0.215±0.00 N/A N/A N/A N/A N/A N/A
ENST00000475178 1.224±0.00 N/A 1.308±0.00 N/A 0.193±0.00 N/A N/A 1.161±0.00 0.915±0.00 1.886±0.00 N/A
ENST00000487099 N/A 0.375±0.00 0.135±0.00 0.317±0.00 0.027±0.00 0.661±0.00 0.375±0.00 N/A 0.124±0.00 0.654±0.00 16.120±6.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_00098L CIL_00098L_0001 VISTA 9:124060941-124661966
CIL_00075I CIL_00075I_0001 CGP 9:124481236-124771310
CIL_00075J CIL_00075J_0001 CGP 9:124517275-124814885

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 ISS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 ISS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007276 ISS gamete generation
GO:0007283 TAS spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0008283 TAS cell proliferation
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0042803 ISS protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 ISS:IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018030 nr6a1a nuclear receptor subfamily 6, group A, member 1a protein_coding Danio_rerio
ENSMUSG00000063972 Nr6a1 nuclear receptor subfamily 6, group A, member 1 protein_coding Mus_musculus

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