C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 6, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487099 NR6A1-001 ENSG00000148200 9606 - 9:124517275-124771277 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000487099
Transcript ID Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000487099 0.375±0.00 0.135±0.00 0.317±0.00 0.027±0.00 0.661±0.00 0.375±0.00 0.124±0.00 0.654±0.00 16.120±6.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_00098L CIL_00098L_0001 VISTA 9:124060941-124661966
CIL_00075I CIL_00075I_0001 CGP 9:124481236-124771310
CIL_00075J CIL_00075J_0001 CGP 9:124517275-124814885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 ISS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 ISS transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007276 ISS gamete generation
GO:0007283 TAS spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0008283 TAS cell proliferation
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0042803 ISS protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 ISS:IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076275 Nr6a1-201 protein_coding Mus_musculus 0 2398
ENSMUST00000168098 Nr6a1-202 protein_coding Mus_musculus 0 2398
ENSMUST00000112877 Nr6a1-001 protein_coding Mus_musculus 0 2398
ENSMUST00000142130 Nr6a1-002 protein_coding Mus_musculus 0 1037
ENSMUST00000142113 Nr6a1-003 protein_coding Mus_musculus 0 979
ENSMUST00000132636 Nr6a1-004 processed_transcript Mus_musculus 0 918
ENSMUST00000128688 Nr6a1-007 processed_transcript Mus_musculus 0 913
ENSMUST00000156301 Nr6a1-006 processed_transcript Mus_musculus 0 673
ENSMUST00000123342 Nr6a1-008 processed_transcript Mus_musculus 0 486
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 68

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