Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_00075J_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000148200-ENSG00000185585	CGP	9606	9:124517275-124814885
Gene	Transcript	Position	Biotype
ENSG00000148200 (NR6A1) nuclear receptor subfamily 6, group A, member 1	ENST00000344523 (NR6A1-004)	124522467-124771287	protein_coding
	ENST00000373584 (NR6A1-003)	124522424-124771297	protein_coding
	ENST00000416460 (NR6A1-002)	124522426-124771310	protein_coding
	ENST00000475178 (NR6A1-005)	124538092-124595808	protein_coding
	ENST00000487099 (NR6A1-001)	124517275-124771277	protein_coding
ENSG00000185585 (OLFML2A) olfactomedin-like 2A	ENST00000288815 (OLFML2A-003)	124800874-124814885	protein_coding
	ENST00000331715 (OLFML2A-001)	124777158-124804236	protein_coding
	ENST00000373580 (OLFML2A-002)	124777271-124814878	protein_coding
ENSG00000207595 (MIR181A2) microRNA 181a-2	ENST00000384863 (MIR181A2-201)	124692442-124692551	miRNA
ENSG00000207737 (MIR181B2) microRNA 181b-2	ENST00000385004 (MIR181B2-201)	124693710-124693798	miRNA
ENSG00000224020 (MIR181A2HG) MIR181A2 host gene (non-protein coding)	ENST00000429139 (MIR181A2HG-001)	124658467-124698631	antisense
ENSG00000231744 (RP11-164H5.1)	ENST00000440419 (RP11-164H5.1-001)	124598707-124599580	processed_pseudogene
ENSG00000236643 (RP11-175D17.3)	ENST00000438380 (RP11-175D17.3-001)	124770123-124772927	antisense
ENSG00000241246 (RN7SL302P) RNA, 7SL, cytoplasmic 302, pseudogene	ENST00000475999 (RN7SL302P-201)	124607159-124607458	misc_RNA

CIL_00075J_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000063972-ENSMUSG00000046618	CGP	10090	2:38723370-38963753
Gene	Transcript	Position	Biotype
ENSMUSG00000046618 (Olfml2a) olfactomedin-like 2A	ENSMUST00000057279 (Olfml2a-001)	38931978-38963753	protein_coding
ENSMUSG00000063972 (Nr6a1) nuclear receptor subfamily 6, group A, member 1	ENSMUST00000076275 (Nr6a1-201)	38723374-38926217	protein_coding
	ENSMUST00000112877 (Nr6a1-001)	38723370-38927688	protein_coding
	ENSMUST00000123099 (Nr6a1-005)	38781920-38784469	processed_transcript
	ENSMUST00000123342 (Nr6a1-008)	38737597-38740464	processed_transcript
	ENSMUST00000128688 (Nr6a1-007)	38738727-38742957	processed_transcript
	ENSMUST00000132636 (Nr6a1-004)	38740424-38785111	processed_transcript
	ENSMUST00000142113 (Nr6a1-003)	38739135-38784520	protein_coding
	ENSMUST00000142130 (Nr6a1-002)	38740543-38926275	protein_coding
	ENSMUST00000156301 (Nr6a1-006)	38742441-38784469	processed_transcript
	ENSMUST00000168098 (Nr6a1-202)	38723374-38784515	protein_coding
ENSMUSG00000082508 (Rpl15-ps4) ribosomal protein L15, pseudogene 4	ENSMUST00000122372 (Rpl15-ps4-001)	38777736-38778341	processed_pseudogene
ENSMUSG00000083776 (Gm13473) predicted gene 13473	ENSMUST00000119289 (Gm13473-001)	38939343-38939929	processed_pseudogene
ENSMUSG00000085201 (Nr6a1os) nuclear receptor subfamily 6, group A, member 1, opposite strand	ENSMUST00000129089 (Nr6a1os-002)	38823257-38838600	antisense
	ENSMUST00000151229 (Nr6a1os-001)	38823341-38852370	antisense

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000148200

ENST00000344523

N/A

0.163±0.00

0.224±0.00

N/A

0.206±0.00

N/A

ENST00000373584

N/A

ENST00000416460

N/A

0.178±0.00

N/A

0.215±0.00

N/A

ENST00000475178

N/A

1.224±0.00

N/A

1.308±0.00

N/A

0.193±0.00

N/A

1.161±0.00

0.915±0.00

1.886±0.00

N/A

ENST00000487099

N/A

0.375±0.00

0.135±0.00

0.317±0.00

0.027±0.00

0.661±0.00

0.375±0.00

N/A

0.124±0.00

0.654±0.00

N/A

16.120±6.70

ENSG00000185585

ENST00000288815

N/A

1.565±0.00

N/A

0.048±0.00

N/A

1.294±0.00

0.031±0.00

N/A

3.329±2.73

1.040±0.39

0.783±0.00

ENST00000331715

N/A

0.138±0.00

N/A

ENST00000373580

23.337±0.00

2.797±0.00

0.496±0.00

0.709±0.56

10.246±9.37

9.092±7.32

5.541±4.51

0.846±0.72

4.667±0.00

5.916±4.10

4.935±4.27

7.163±5.02

2.927±0.50

1.611±0.83

ENSG00000207595

ENST00000384863

N/A

0.702±0.00

ENSG00000207737

ENST00000385004

N/A

0.260±0.00

N/A

ENSG00000224020

ENST00000429139

0.056±0.00

0.113±0.00

0.632±0.00

0.432±0.14

0.018±0.00

0.118±0.00

N/A

0.128±0.04

0.792±0.00

0.579±0.05

N/A

0.562±0.10

0.139±0.01

0.101±0.00

ENSG00000231744

ENST00000440419

N/A

0.028±0.00

0.879±0.00

0.319±0.00

N/A

0.444±0.00

0.282±0.00

N/A

0.329±0.00

N/A

0.160±0.15

N/A

0.132±0.06

ENSG00000236643

ENST00000438380

N/A

0.078±0.00

0.224±0.00

N/A

0.278±0.17

N/A

0.325±0.00

ENSG00000241246

ENST00000475999

N/A

0.070±0.00

N/A

0.187±0.00

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000046618

ENSMUST00000057279

4.715±2.29

3.470±0.63

3.221±1.55

1.344±1.08

3.361±1.17

1.209±0.13

1.541±0.44

0.462±0.05

0.057±0.02

5.688±0.29

0.947±0.16

10.141±1.19

0.270±0.07

0.499±0.30

ENSMUSG00000063972

ENSMUST00000076275

0.445±0.28

0.736±0.22

0.365±0.14

1.096±0.27

0.396±0.17

1.110±0.00

0.262±0.04

0.240±0.05

0.292±0.17

N/A

0.303±0.09

0.919±0.08

3.903±1.83

12.385±7.83

ENSMUST00000112877

0.829±0.41

0.864±0.60

0.602±0.01

0.658±0.28

0.511±0.29

0.955±0.50

0.138±0.02

0.682±0.19

0.563±0.41

0.858±0.18

0.154±0.00

2.112±0.95

1.852±0.37

23.102±10.08

ENSMUST00000123099

N/A

ENSMUST00000123342

N/A

ENSMUST00000128688

N/A

1.470±0.00

N/A

1.457±0.53

N/A

0.454±0.00

N/A

2.423±0.03

N/A

60.870±3.88

ENSMUST00000132636

N/A

ENSMUST00000142113

N/A

ENSMUST00000142130

N/A

60.115±0.00

ENSMUST00000156301

N/A

ENSMUST00000168098

N/A

0.942±0.35

N/A

0.183±0.00

0.891±0.00

N/A

0.805±0.00

0.669±0.50

N/A

0.522±0.13

1.364±0.17

1.085±0.05

N/A

ENSMUSG00000082508

ENSMUST00000122372

N/A

0.256±0.00

0.026±0.01

0.069±0.00

0.197±0.00

N/A

0.141±0.04

0.116±0.13

N/A

0.639±0.25

N/A

0.188±0.00

ENSMUSG00000083776

ENSMUST00000119289

N/A

0.298±0.00

N/A

0.238±0.01

0.117±0.09

N/A

ENSMUSG00000085201

ENSMUST00000129089

0.192±0.00

N/A

1.598±0.00

0.303±0.12

N/A

0.255±0.04

0.143±0.01

0.051±0.03

0.171±0.00

N/A

0.332±0.20

0.034±0.00

N/A

ENSMUST00000151229

N/A

0.678±0.00

N/A

0.257±0.08

0.101±0.00

0.121±0.06

N/A

0.606±0.40

0.598±0.27

0.138±0.00

0.377±0.00

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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