C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC16 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371706 SEC16A-001 ENSG00000148396 9606 - 9:136440101-136477115 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000371706
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000371706 1.916±0.00 1.269±0.00 1.651±0.00 2.120±0.03 1.480±0.00 2.062±0.00 2.347±0.00 2.602±0.00 1.545±0.00 2.025±0.00 1.553±0.00 4.233±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X7 CIL_0003X7_0001 CGP 9:136428619-136483759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0007029 IDA endoplasmic reticulum organization
GO:0015031 IEA protein transport
GO:0021762 IEP substantia nigra development
GO:0048208 IEA COPII vesicle coating

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091252 Sec16a-201 protein_coding Mus_musculus 0 3064
ENSMUST00000114082 Sec16a-001 protein_coding Mus_musculus 0 3064
ENSMUST00000156442 Sec16a-002 protein_coding Mus_musculus 0 1347
ENSMUST00000148306 Sec16a-004 processed_transcript Mus_musculus 0 200

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