C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: USP6 N-terminal like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148429 USP6NL 9606 - 10:11453946-11611754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000277575 USP6NL-201 11460510-11532275 protein_coding
  ENST00000379237 USP6NL-005 11460510-11573737 protein_coding
  ENST00000443016 USP6NL-003 11563187-11573496 processed_transcript
  ENST00000606752 USP6NL-002 11564127-11611666 processed_transcript
  ENST00000609104 USP6NL-001 11453946-11611754 protein_coding
  ENST00000609853 USP6NL-004 11564127-11573841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277575ENST00000379237ENST00000609104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277575 2.565±0.00 3.566±0.00 1.080±0.00 1.098±0.81 1.957±0.12 1.862±0.00 0.881±0.35 1.109±0.00 1.634±0.01 3.186±0.36 0.401±0.15 3.623±0.79 2.513±0.09 12.996±3.56
ENST00000379237 N/A N/A N/A 1.147±0.00 N/A 0.848±0.00 N/A 2.188±0.00 N/A N/A N/A 4.105±0.00 N/A N/A
ENST00000609104 0.480±0.00 N/A 0.249±0.00 0.218±0.01 0.460±0.03 0.438±0.10 0.233±0.15 0.440±0.02 0.283±0.04 0.515±0.00 0.072±0.00 0.947±0.52 0.330±0.16 1.020±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0001 VISTA 10:11379308-11980769

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IDA:IEA Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0007030 IMP Golgi organization
GO:0017137 IPI Rab GTPase binding
GO:0019068 IMP virion assembly
GO:0031410 IDA cytoplasmic vesicle
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IDA positive regulation of GTP catabolic process
GO:0035526 IMP retrograde transport, plasma membrane to Golgi
GO:0048227 IMP plasma membrane to endosome transport
GO:1903358 IMP regulation of Golgi organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022187 usp6nl USP6 N-terminal like protein_coding Danio_rerio
ENSMUSG00000039046 Usp6nl USP6 N-terminal like protein_coding Mus_musculus

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