C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: USP6 N-terminal like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039046 Usp6nl 10090 + 2:6322667-6446390 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042503 Usp6nl-003 6352733-6443494 protein_coding
  ENSMUST00000114937 Usp6nl-001 6322667-6446390 protein_coding
  ENSMUST00000132391 Usp6nl-002 6322772-6421012 processed_transcript
  ENSMUST00000150515 Usp6nl-004 6420922-6424835 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042503ENSMUST00000114937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042503 2.387±1.26 1.749±0.61 0.588±0.00 3.901±1.00 1.906±0.46 2.971±0.75 0.402±0.09 1.468±0.48 1.882±0.75 3.083±0.37 0.186±0.04 3.104±0.87 4.106±2.57 2.832±0.26
ENSMUST00000114937 1.312±0.72 2.447±0.00 2.782±0.46 2.356±0.61 1.349±0.51 3.367±0.92 0.539±0.17 2.300±0.80 2.373±0.96 3.413±1.04 0.646±0.14 3.760±1.22 2.651±0.33 1.890±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0002 VISTA 2:5960988-6562915
CIL_0000RW CIL_0000RW_0002 CGP 2:6322667-7509563

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 ISS Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0007030 ISS Golgi organization
GO:0017137 IEA Rab GTPase binding
GO:0019068 IEA virion assembly
GO:0031410 ISS cytoplasmic vesicle
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IEA positive regulation of GTP catabolic process
GO:0035526 ISS retrograde transport, plasma membrane to Golgi
GO:0048227 IEA plasma membrane to endosome transport
GO:1903358 IEA regulation of Golgi organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022187 usp6nl USP6 N-terminal like protein_coding Danio_rerio
ENSG00000148429 USP6NL USP6 N-terminal like protein_coding Homo_sapiens

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