C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: USP6 N-terminal like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000609104 USP6NL-001 ENSG00000148429 9606 - 10:11453946-11611754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000609104
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000609104 0.480±0.00 0.249±0.00 0.218±0.01 0.460±0.03 0.438±0.10 0.233±0.15 0.440±0.02 0.283±0.04 0.515±0.00 0.072±0.00 0.947±0.52 0.330±0.16 1.020±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0001 VISTA 10:11379308-11980769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IDA:IEA Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0007030 IMP Golgi organization
GO:0017137 IPI Rab GTPase binding
GO:0019068 IMP virion assembly
GO:0031410 IDA cytoplasmic vesicle
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IDA positive regulation of GTP catabolic process
GO:0035526 IMP retrograde transport, plasma membrane to Golgi
GO:0048227 IMP plasma membrane to endosome transport
GO:1903358 IMP regulation of Golgi organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114937 Usp6nl-001 protein_coding Mus_musculus 0 2444
ENSMUST00000042503 Usp6nl-003 protein_coding Mus_musculus 0 2097
ENSMUST00000132391 Usp6nl-002 processed_transcript Mus_musculus 0 440

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