C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structure specific recognition protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149136 SSRP1 9606 - 11:57325985-57335877 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000278412 SSRP1-001 57325985-57335877 protein_coding
  ENST00000293880 SSRP1-002 57325986-57335851 retained_intron
  ENST00000526696 SSRP1-004 57332386-57335473 protein_coding
  ENST00000529002 SSRP1-003 57332639-57335873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278412ENST00000293880
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278412 12.312±0.00 15.450±0.00 3.222±0.00 16.393±11.02 6.294±1.44 8.201±1.34 11.209±0.00 6.793±2.87 6.185±0.46 10.988±10.26 28.700±28.20 18.505±9.53 46.695±19.48 63.753±15.61
ENST00000293880 N/A N/A 0.223±0.00 N/A N/A N/A N/A 0.261±0.00 N/A 0.290±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LO CIL_0002LO_0002 CGP 11:57325985-57370600

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0044822 IDA poly(A) RNA binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016994 ssrp1b structure specific recognition protein 1b protein_coding Danio_rerio
ENSDARG00000037397 ssrp1a structure specific recognition protein 1a protein_coding Danio_rerio
ENSMUSG00000027067 Ssrp1 structure specific recognition protein 1 protein_coding Mus_musculus

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