C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structure specific recognition protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027067 Ssrp1 10090 + 2:85037234-85047109 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077798 Ssrp1-001 85037234-85047109 protein_coding
  ENSMUST00000123467 Ssrp1-003 85037453-85039271 processed_transcript
  ENSMUST00000127069 Ssrp1-008 85045355-85046285 processed_transcript
  ENSMUST00000130729 Ssrp1-002 85037455-85045772 protein_coding
  ENSMUST00000135414 Ssrp1-004 85037533-85040455 processed_transcript
  ENSMUST00000142359 Ssrp1-006 85041174-85042309 processed_transcript
  ENSMUST00000145097 Ssrp1-007 85045251-85046718 processed_transcript
  ENSMUST00000146530 Ssrp1-005 85040112-85041022 processed_transcript
  ENSMUST00000168266 Ssrp1-201 85037451-85047106 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077798ENSMUST00000130729ENSMUST00000145097ENSMUST00000146530ENSMUST00000168266
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077798 27.148±12.25 19.930±5.77 25.442±1.95 34.794±15.99 19.846±6.11 15.971±3.78 10.273±1.38 17.684±2.67 36.612±30.12 23.389±1.52 9.518±0.92 31.346±11.84 34.391±15.75 26.310±3.77
ENSMUST00000130729 13.013±0.98 N/A 10.218±2.35 22.575±2.21 N/A N/A 4.249±0.36 N/A 22.717±14.26 7.230±0.00 3.569±0.00 37.384±20.35 31.946±27.95 38.294±24.05
ENSMUST00000145097 N/A N/A N/A 67.351±0.00 N/A N/A N/A N/A N/A N/A N/A 143.705±0.00 104.588±53.76 176.625±0.00
ENSMUST00000146530 N/A 20.671±2.10 N/A N/A 24.490±4.60 18.917±6.07 N/A N/A 10.897±1.75 16.259±0.70 N/A 37.015±8.03 N/A N/A
ENSMUST00000168266 N/A N/A N/A N/A 28.442±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NZ CIL_0002NZ_0002 CGP 2:84998583-85047109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016994 ssrp1b structure specific recognition protein 1b protein_coding Danio_rerio
ENSDARG00000037397 ssrp1a structure specific recognition protein 1a protein_coding Danio_rerio
ENSG00000149136 SSRP1 structure specific recognition protein 1 protein_coding Homo_sapiens

Loading