C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structure specific recognition protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000278412 SSRP1-001 ENSG00000149136 9606 - 11:57325985-57335877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000278412
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000278412 12.312±0.00 15.450±0.00 3.222±0.00 16.393±11.02 6.294±1.44 8.201±1.34 11.209±0.00 6.793±2.87 6.185±0.46 10.988±10.26 28.700±28.20 18.505±9.53 46.695±19.48 63.753±15.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LO CIL_0002LO_0002 CGP 11:57325985-57370600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0044822 IDA poly(A) RNA binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077798 Ssrp1-001 protein_coding Mus_musculus 0 2754
ENSMUST00000168266 Ssrp1-201 protein_coding Mus_musculus 0 2734
ENSMUST00000130729 Ssrp1-002 protein_coding Mus_musculus 0 2447
ENSDART00000131296 ssrp1b-002 protein_coding Danio_rerio 0 787
ENSDART00000003895 ssrp1b-201 protein_coding Danio_rerio 0 773
ENSDART00000100268 ssrp1b-202 protein_coding Danio_rerio 0 756
ENSDART00000142187 ssrp1b-001 protein_coding Danio_rerio 0 756
ENSMUST00000135414 Ssrp1-004 processed_transcript Mus_musculus 0 741
ENSMUST00000146530 Ssrp1-005 processed_transcript Mus_musculus 0 664
ENSMUST00000145097 Ssrp1-007 processed_transcript Mus_musculus 0 604
ENSMUST00000142359 Ssrp1-006 processed_transcript Mus_musculus 0 375
ENSMUST00000123467 Ssrp1-003 processed_transcript Mus_musculus 0 337
ENSMUST00000127069 Ssrp1-008 processed_transcript Mus_musculus 0 224

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