C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neural cell adhesion molecule 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149294 NCAM1 9606 + 11:112961247-113278436 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316851 NCAM1-001 112961402-113278436 protein_coding
  ENST00000401611 NCAM1-008 112961368-113263012 protein_coding
  ENST00000524916 NCAM1-027 113255950-113263174 protein_coding
  ENST00000525355 NCAM1-021 113233258-113260387 retained_intron
  ENST00000525691 NCAM1-022 113240507-113260275 retained_intron
  ENST00000525973 NCAM1-016 113130694-113205666 processed_transcript
  ENST00000526322 NCAM1-009 113232325-113263267 protein_coding
  ENST00000528158 NCAM1-013 113273020-113277866 processed_transcript
  ENST00000528590 NCAM1-012 113233147-113275448 protein_coding
  ENST00000529356 NCAM1-005 112961437-113221903 protein_coding
  ENST00000530090 NCAM1-024 113260091-113263177 retained_intron
  ENST00000530543 NCAM1-020 113232262-113260198 protein_coding
  ENST00000531044 NCAM1-004 112961436-113275489 protein_coding
  ENST00000531817 NCAM1-010 113232793-113263293 nonsense_mediated_decay
  ENST00000531927 NCAM1-025 113260258-113273101 retained_intron
  ENST00000533073 NCAM1-011 113232795-113275963 processed_transcript
  ENST00000533226 NCAM1-026 113269969-113275282 retained_intron
  ENST00000534046 NCAM1-019 113231380-113232748 retained_intron
  ENST00000534516 NCAM1-023 113246108-113260317 retained_intron
  ENST00000611284 NCAM1-007 113132928-113275564 processed_transcript
  ENST00000613217 NCAM1-018 112961402-113232222 protein_coding
  ENST00000615112 NCAM1-201 112961247-113278411 protein_coding
  ENST00000615285 NCAM1-202 112961247-113278411 protein_coding
  ENST00000615525 NCAM1-028 112961439-113133951 processed_transcript
  ENST00000617166 NCAM1-014 112961425-113041216 processed_transcript
  ENST00000618266 NCAM1-203 112961247-113278411 protein_coding
  ENST00000619839 NCAM1-002 112961275-113275387 protein_coding
  ENST00000620046 NCAM1-015 112961435-113270239 protein_coding
  ENST00000621128 NCAM1-003 112961368-113265197 protein_coding
  ENST00000621518 NCAM1-204 112961247-113265195 protein_coding
  ENST00000621850 NCAM1-006 112961480-113263293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316851ENST00000401611ENST00000525973ENST00000528158ENST00000531044ENST00000533073ENST00000611284ENST00000615112ENST00000615285ENST00000618266ENST00000621128ENST00000621518ENST00000621850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316851 N/A 1.777±0.00 N/A 9.522±0.00 0.561±0.00 N/A N/A N/A N/A N/A N/A 2.529±0.00 0.206±0.01 4.013±0.00
ENST00000401611 N/A N/A N/A 24.521±0.00 N/A 1.546±0.00 8.199±0.00 0.342±0.00 5.460±0.00 0.207±0.00 N/A N/A N/A N/A
ENST00000525973 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.357±0.00 2.451±0.00 N/A N/A N/A
ENST00000528158 N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A 0.255±0.00 0.663±0.60 0.285±0.01 1.245±0.00
ENST00000531044 N/A N/A 0.318±0.00 49.873±0.00 0.829±0.00 N/A N/A N/A 3.787±0.00 N/A N/A N/A 0.168±0.00 N/A
ENST00000533073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A
ENST00000611284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.342±0.00
ENST00000615112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.641±0.00 N/A N/A N/A
ENST00000615285 0.289±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618266 N/A 1.190±0.00 N/A 16.623±0.00 0.217±0.00 N/A N/A 0.241±0.00 0.091±0.00 0.126±0.00 N/A N/A N/A 0.947±0.00
ENST00000621128 0.526±0.00 1.392±0.00 N/A 59.444±0.00 0.267±0.00 10.743±0.00 N/A 0.325±0.00 2.554±0.00 0.392±0.00 N/A 1.760±1.74 0.123±0.00 N/A
ENST00000621518 N/A N/A N/A N/A N/A 0.498±0.00 36.690±0.00 N/A N/A N/A N/A N/A N/A 1.777±0.00
ENST00000621850 N/A N/A N/A N/A 1.445±0.00 N/A 5.810±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000864 CIL_000864_0001 VISTA 11:112722439-113324450

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001928 IEA regulation of exocyst assembly
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0007155 IEA cell adhesion
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007411 TAS axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030198 TAS extracellular matrix organization
GO:0030424 IEA axon
GO:0030426 IEA growth cone
GO:0031175 IEA neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0034109 IEA homotypic cell-cell adhesion
GO:0042802 IPI identical protein binding
GO:0043025 IEA neuronal cell body
GO:0050850 IEA positive regulation of calcium-mediated signaling
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007220 ncam1b neural cell adhesion molecule 1b protein_coding Danio_rerio
ENSDARG00000056181 ncam1a neural cell adhesion molecule 1a protein_coding Danio_rerio
ENSMUSG00000039542 Ncam1 neural cell adhesion molecule 1 protein_coding Mus_musculus

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