C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neural cell adhesion molecule 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039542 Ncam1 10090 - 9:49504361-49798922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114476 Ncam1-201 49517506-49798922 protein_coding
  ENSMUST00000166811 Ncam1-202 49504361-49798729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114476ENSMUST00000166811
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114476 0.655±0.72 1.010±0.09 59.583±2.94 0.233±0.14 0.883±0.27 0.911±0.09 0.326±0.13 0.097±0.09 0.269±0.16 1.131±0.39 1.399±0.42 3.013±0.00 1.590±0.18
ENSMUST00000166811 0.735±0.60 1.092±0.18 10.867±2.42 0.160±0.03 1.170±0.57 0.230±0.07 0.392±0.05 0.354±0.07 0.188±0.02 0.227±0.09 2.026±0.62 2.795±1.90 1.008±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000864 CIL_000864_0002 VISTA 9:49436439-50038292

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001928 IMP regulation of exocyst assembly
GO:0005515 IPI protein binding
GO:0005911 IDA cell-cell junction
GO:0007166 IDA cell surface receptor signaling pathway
GO:0009897 IDA external side of plasma membrane
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0031175 IGI neuron projection development
GO:0034109 IMP homotypic cell-cell adhesion
GO:0043025 IDA neuronal cell body
GO:0050850 IDA positive regulation of calcium-mediated signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007220 ncam1b neural cell adhesion molecule 1b protein_coding Danio_rerio
ENSDARG00000056181 ncam1a neural cell adhesion molecule 1a protein_coding Danio_rerio
ENSG00000149294 NCAM1 neural cell adhesion molecule 1 protein_coding Homo_sapiens

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