C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316851 NCAM1-001 ENSG00000149294 9606 + 11:112961402-113278436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastOvaryPlacentaTestisENST00000316851
Transcript ID Adrenal Brain Breast Ovary Placenta Testis
ENST00000316851 1.777±0.00 9.522±0.00 0.561±0.00 2.529±0.00 0.206±0.01 4.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000864 CIL_000864_0001 VISTA 11:112722439-113324450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007411 TAS axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030198 TAS extracellular matrix organization
GO:0031225 IEA anchored component of membrane
GO:0042802 IPI identical protein binding
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166811 Ncam1-202 protein_coding Mus_musculus 0 3496
ENSMUST00000114476 Ncam1-201 protein_coding Mus_musculus 0 2723
ENSDART00000017229 ncam1a-001 protein_coding Danio_rerio 4e-34 152
ENSDART00000156658 ncam1a-201 protein_coding Danio_rerio 8e-26 124
ENSDART00000101117 ncam1a-003 protein_coding Danio_rerio 1e-24 121

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