C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane 7 superfamily member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149809 TM7SF2 9606 + 11:65111845-65116384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000279263 TM7SF2-001 65111854-65116356 protein_coding
  ENST00000345348 TM7SF2-003 65111884-65116235 protein_coding
  ENST00000524690 TM7SF2-013 65112048-65115035 nonsense_mediated_decay
  ENST00000524986 TM7SF2-023 65111867-65114946 protein_coding
  ENST00000525385 TM7SF2-007 65111879-65115384 protein_coding
  ENST00000526048 TM7SF2-016 65113550-65116209 retained_intron
  ENST00000526085 TM7SF2-025 65111891-65115081 protein_coding
  ENST00000526809 TM7SF2-024 65111845-65115514 protein_coding
  ENST00000527851 TM7SF2-014 65112739-65114832 retained_intron
  ENST00000527968 TM7SF2-020 65113496-65115967 protein_coding
  ENST00000528026 TM7SF2-012 65111872-65114857 retained_intron
  ENST00000528802 TM7SF2-018 65113509-65115957 protein_coding
  ENST00000529233 TM7SF2-011 65112705-65115550 retained_intron
  ENST00000529292 TM7SF2-002 65111889-65116273 nonsense_mediated_decay
  ENST00000529414 TM7SF2-028 65111890-65114765 protein_coding
  ENST00000529601 TM7SF2-004 65111878-65116384 nonsense_mediated_decay
  ENST00000530650 TM7SF2-005 65111902-65116230 retained_intron
  ENST00000530750 TM7SF2-027 65111998-65113533 protein_coding
  ENST00000530892 TM7SF2-022 65112271-65113414 retained_intron
  ENST00000531029 TM7SF2-021 65112644-65115004 processed_transcript
  ENST00000531321 TM7SF2-008 65111886-65115598 protein_coding
  ENST00000532328 TM7SF2-017 65113371-65115436 retained_intron
  ENST00000533646 TM7SF2-009 65111875-65113082 processed_transcript
  ENST00000533766 TM7SF2-010 65111872-65115390 retained_intron
  ENST00000534371 TM7SF2-026 65111872-65115394 protein_coding
  ENST00000534667 TM7SF2-015 65113214-65113782 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverOvaryENST00000345348ENST00000529601
Transcript ID Adipose Brain Breast Heart Kidney Liver Ovary
ENST00000345348 114.885±0.00 25.217±0.00 94.060±0.00 17.007±0.00 N/A 18.006±0.00 115.842±0.00
ENST00000529601 N/A 9.032±0.00 N/A 3.862±0.00 21.678±0.00 N/A 5.733±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O4 CIL_0005O4_0002 CGP 11:65089324-65116384
CIL_0002IZ CIL_0002IZ_0002 CGP 11:65111845-65117708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 TAS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006695 TAS cholesterol biosynthetic process
GO:0016020 IEA membrane
GO:0016628 IEA oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0043235 IDA receptor complex
GO:0044281 TAS small molecule metabolic process
GO:0050613 IEA delta14-sterol reductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032816 tm7sf2 transmembrane 7 superfamily member 2 protein_coding Danio_rerio
ENSMUSG00000024799 Tm7sf2 transmembrane 7 superfamily member 2 protein_coding Mus_musculus

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