C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane 7 superfamily member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345348 TM7SF2-003 ENSG00000149809 9606 + 11:65111884-65116235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverOvaryENST00000345348
Transcript ID Adipose Brain Breast Heart Liver Ovary
ENST00000345348 114.885±0.00 25.217±0.00 94.060±0.00 17.007±0.00 18.006±0.00 115.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O4 CIL_0005O4_0002 CGP 11:65089324-65116384
CIL_0002IZ CIL_0002IZ_0002 CGP 11:65111845-65117708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 TAS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006695 TAS cholesterol biosynthetic process
GO:0016020 IEA membrane
GO:0016628 IEA oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0043235 IDA receptor complex
GO:0044281 TAS small molecule metabolic process
GO:0050613 IEA delta14-sterol reductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159084 Tm7sf2-007 protein_coding Mus_musculus 0 1214
ENSMUST00000113543 Tm7sf2-006 protein_coding Mus_musculus 0 898
ENSMUST00000025713 Tm7sf2-001 protein_coding Mus_musculus 0 898
ENSMUST00000161090 Tm7sf2-013 nonsense_mediated_decay Mus_musculus 0 604
ENSMUST00000160354 Tm7sf2-008 retained_intron Mus_musculus 0 580
ENSMUST00000162810 Tm7sf2-009 protein_coding Mus_musculus 0 486
ENSMUST00000162575 Tm7sf2-014 protein_coding Mus_musculus 0 446
ENSMUST00000159836 Tm7sf2-011 retained_intron Mus_musculus 0 392
ENSMUST00000161718 Tm7sf2-010 protein_coding Mus_musculus 0 320
ENSMUST00000161528 Tm7sf2-004 protein_coding Mus_musculus 0 298
ENSMUST00000162549 Tm7sf2-003 retained_intron Mus_musculus 0 254
ENSMUST00000160028 Tm7sf2-002 protein_coding Mus_musculus 6e-32 143

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