C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4 carbon catabolite repression 4-like (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151014 CCRN4L 9606 + 4:139015789-139045752 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000280614 CCRN4L-001 139015789-139045752 protein_coding
  ENST00000515616 CCRN4L-003 139043072-139045105 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000280614ENST00000515616
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000280614 0.807±0.00 1.533±0.00 1.788±0.00 0.950±0.00 N/A 1.033±0.10 2.330±1.54 1.224±0.43 1.353±0.76 2.848±2.37 0.880±0.28 1.924±0.25 1.262±0.00
ENST00000515616 1.505±0.00 N/A N/A N/A 0.375±0.00 N/A N/A N/A 2.593±0.00 1.112±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Q CIL_00001Q_0001 CGP 4:138164097-139045752
CIL_0006YJ CIL_0006YJ_0002 CGP 4:139015789-139177218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000290 IEA deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003729 ISS mRNA binding
GO:0004535 ISS poly(A)-specific ribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0007623 IEA circadian rhythm
GO:0009991 ISS response to extracellular stimulus
GO:0010629 ISS negative regulation of gene expression
GO:0032496 ISS response to lipopolysaccharide
GO:0032922 ISS circadian regulation of gene expression
GO:0033962 IEA cytoplasmic mRNA processing body assembly
GO:0042752 ISS regulation of circadian rhythm
GO:0045600 ISS positive regulation of fat cell differentiation
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0045995 IEA regulation of embryonic development
GO:0046872 IEA metal ion binding
GO:0048255 ISS mRNA stabilization
GO:0048471 ISS perinuclear region of cytoplasm
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077726 ccrn4la CCR4 carbon catabolite repression 4-like a (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000078525 CCRN4L (2 of 2) CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000023087 Ccrn4l CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein_coding Mus_musculus

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